RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB14275" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB14275 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31075161 31075161 PRJDB14275_P_NODE_4155_length_266_cov_2.167401_g4096_i0 PRJDB14275 4155 266 2.167401 5.76528666 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.4 0.0263   NR HVC31885.1 2026724 g4096 i0 31.9 0.778195488721805 69 42 77.8 1 245 39 65 128 HVC31885.1 hypothetical protein [Chloroflexota bacterium] diamond 207 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31865469 31865469 PRJDB14275_P_NODE_7857_length_157_cov_1.694915_g7798_i0 PRJDB14275 7857 157 1.694915 2.66101655 SAR202 cluster bacterium 2030829 Bacteria Bacteria 53.1 2.46e-6   NR MCH2319960.1 2030829 g7798 i0 44 0.955414012738854 50 28 95.5 0 7 156 12 61 MCH2319960.1 hypothetical protein [SAR202 cluster bacterium] diamond 150 53.1 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
32562085 32562085 PRJDB14275_P_NODE_8379_length_151_cov_1.089286_g8320_i0 PRJDB14275 8379 151 1.089286 1.64482186 Thermanaerothrix sp. 2972675 Bacteria Bacteria 65.5 3.85e-12   NR MCX7828979.1 2972675 g8320 i0 61.2 4.90728476821192 49 18 97.4 1 1 147 10 57 MCX7828979.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase [Thermanaerothrix sp.] diamond 741 65.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Thermanaerothrix Thermanaerothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;