RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJDB14274" and tax_kingdom = "Pseudomonadati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Pseudomonadati · 24 ✖

bioproject 1

  • PRJDB14274 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26874509 26874509 PRJDB14274_S_NODE_4801_length_283_cov_1.666667_g4723_i0 PRJDB14274 4801 283 1.666667 4.71666761 Solidesulfovibrio carbinolicus 296842 Bacteria Bacteria 74.7 3.4e-13   NR WP_129348747.1 296842 g4723 i0 39.4 4.86572438162544 94 57 99.6 0 1 282 160 253 WP_129348747.1 bifunctional metallophosphatase/5'-nucleotidase [Solidesulfovibrio carbinolicus] diamond 1377 74.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio carbinolicus
27221829 27221829 PRJDB14274_S_NODE_2583_length_381_cov_1.531250_g2505_i0 PRJDB14274 2583 381 1.53125 5.8340625 Bacteroidota bacterium 1898104 Bacteria Bacteria 149 5.06e-39   NR MBK7911650.1 1898104 g2505 i0 54 3.94488188976378 126 58 99.2 0 2 379 606 731 MBK7911650.1 ribonucleoside-diphosphate reductase subunit alpha [Bacteroidota bacterium] diamond 1503 149 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28043180 28043180 PRJDB14274_S_NODE_7905_length_226_cov_1.012121_g7827_i0 PRJDB14274 7905 226 1.012121 2.28739346 Lacunisphaera sp. 1961806 Bacteria Bacteria 44.3 0.00824   NR HTL66095.1 1961806 g7827 i0 32.3 1.64601769911504 62 42 82.3 0 218 33 246 307 HTL66095.1 hypothetical protein [Lacunisphaera sp.] diamond 372 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
28416316 28416316 PRJDB14274_S_NODE_5506_length_266_cov_2.360976_g5428_i0 PRJDB14274 5506 266 2.360976 6.28019616 root 1 Root_unresolved Root_unresolved 121 1.77e-33   NR WP_416561407.1 573 g5428 i0 71.6 16.8721804511278 88 25 99.2 0 264 1 16 103 WP_416561407.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 4488 122 0.991803278688525 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
28800754 28800754 PRJDB14274_S_NODE_9868_length_205_cov_0.902778_g9790_i0 PRJDB14274 9868 205 0.902778 1.8506949 Nannocystaceae bacterium 2545255 Bacteria Bacteria 44.7 0.0048   NR MEX1365420.1 2545255 g9790 i0 36.7 0.878048780487805 60 35 83.4 2 177 7 56 115 MEX1365420.1 IgGFc-binding protein [Nannocystaceae bacterium] diamond 180 44.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
28832402 28832402 PRJDB14274_S_NODE_10088_length_203_cov_1.267606_g10010_i0 PRJDB14274 10088 203 1.267606 2.57324018 Candidatus Zhuqueibacter pondensis 3396518 Bacteria Bacteria 94.7 1.08e-20   NR MDZ7288678.1 3396518 g10010 i0 73.3 3.63546798029557 60 15 87.2 1 199 23 889 948 MDZ7288678.1 aminomethyl-transferring glycine dehydrogenase [Candidatus Zhuqueibacter pondensis] diamond 738 94.7 1 Bacteria FCB group Pseudomonadati     Candidatus Zhuqueibacterales Candidatus Zhuqueibacteraceae Candidatus Zhuqueibacter Candidatus Zhuqueibacter pondensis
28959029 28959029 PRJDB14274_S_NODE_5608_length_264_cov_2.113300_g5530_i0 PRJDB14274 5608 264 2.1133 5.579112 Pseudomonadota bacterium 1977087 Bacteria Bacteria 43.5 0.0215   NR MDQ6646288.1 1977087 g5530 i0 35.6 0.670454545454545 59 38 67 0 256 80 106 164 MDQ6646288.1 glutathione S-transferase C-terminal domain-containing protein [Pseudomonadota bacterium] diamond 177 43.5 1 Bacteria   Pseudomonadati Pseudomonadota         Pseudomonadota bacterium
29016411 29016411 PRJDB14274_S_NODE_9788_length_205_cov_1.354167_g9710_i0 PRJDB14274 9788 205 1.354167 2.77604235 Pseudomonadati 3379134 Bacteria Bacteria 94.4 1.2e-20   NR NND55299.1 1913989 g9710 i0 86.3 14.8682926829268 51 7 74.6 0 204 52 422 472 NND55299.1 adenosylhomocysteinase [Gammaproteobacteria bacterium] diamond 3048 94.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
29205733 29205733 PRJDB14274_S_NODE_9729_length_206_cov_0.896552_g9651_i0 PRJDB14274 9729 206 0.896552 1.84689712 Pseudomonadati 3379134 Bacteria Bacteria 80.9 8.35e-16   NR NDC88964.1 1898104 g9651 i0 54.4 20.7815533980583 68 29 99 1 206 3 316 381 NDC88964.1 glutamine synthetase type III [Bacteroidota bacterium] diamond 4281 80.9 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29678800 29678800 PRJDB14274_S_NODE_7350_length_234_cov_1.121387_g7272_i0 PRJDB14274 7350 234 1.121387 2.62404558 Pseudomonadati 3379134 Bacteria Bacteria 82 2.2e-17   NR NLY94724.1 2026763 g7272 i0 61.9 1.61538461538462 63 24 80.8 0 2 190 116 178 NLY94724.1 oligoribonuclease [Myxococcales bacterium] diamond 378 82 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29684661 29684661 PRJDB14274_S_NODE_10070_length_203_cov_1.436620_g9992_i0 PRJDB14274 10070 203 1.43662 2.9163386 Pseudomonadota bacterium 1977087 Bacteria Bacteria 103 1.51e-26   NR MEL6702651.1 1977087 g9992 i0 73.1 1.98029556650246 67 18 99 0 201 1 42 108 MEL6702651.1 30S ribosomal protein S11 [Pseudomonadota bacterium] diamond 402 103 1 Bacteria   Pseudomonadati Pseudomonadota         Pseudomonadota bacterium
29937741 29937741 PRJDB14274_S_NODE_9411_length_208_cov_1.115646_g9333_i0 PRJDB14274 9411 208 1.115646 2.32054368 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0134   NR MEM7457776.1 2026780 g9333 i0 48.7 0.5625 39 19 56.3 1 80 196 46 83 MEM7457776.1 hypothetical protein [Planctomycetota bacterium] diamond 117 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30253868 30253868 PRJDB14274_S_NODE_9612_length_207_cov_0.883562_g9534_i0 PRJDB14274 9612 207 0.883562 1.82897334 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 110 4.23e-26   NR MCB0345085.1 2053517 g9534 i0 76.6 4.63768115942029 64 15 92.8 0 15 206 247 310 MCB0345085.1 acetate--CoA ligase [Bdellovibrionales bacterium] diamond 960 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30348914 30348914 PRJDB14274_S_NODE_8732_length_215_cov_1.220779_g8654_i0 PRJDB14274 8732 215 1.220779 2.62467485 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 80.5 5.15e-17   NR MFO0203429.1 1913988 g8654 i0 59.3 0.823255813953488 59 24 82.3 0 213 37 91 149 MFO0203429.1 hypothetical protein [Alphaproteobacteria bacterium] diamond 177 80.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
30853863 30853863 PRJDB14274_S_NODE_2874_length_361_cov_1.616667_g2796_i0 PRJDB14274 2874 361 1.616667 5.83616787 Flavobacteriales bacterium CG_4_8_14_3_um_filter_35_1 2021391 Bacteria Bacteria 98.2 1.68e-21   NR PIX07545.1 1974001 g2796 i0 75.2 0.939058171745152 113 28 93.9 0 355 17 254 366 PIX07545.1 MAG: hypothetical protein COZ76_02930 [Flavobacteriales bacterium CG_4_8_14_3_um_filter_35_10] diamond 339 98.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales     Flavobacteriales bacterium CG_4_8_14_3_um_filter_35_10
31011843 31011843 PRJDB14274_S_NODE_10135_length_203_cov_0.915493_g10057_i0 PRJDB14274 10135 203 0.915493 1.85845079 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 80.9 3.1e-17   NR MFO0203429.1 1913988 g10057 i0 55.2 4.95073891625616 67 30 99 0 201 1 82 148 MFO0203429.1 hypothetical protein [Alphaproteobacteria bacterium] diamond 1005 80.9 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
31037908 31037908 PRJDB14274_S_NODE_8175_length_222_cov_1.397516_g8097_i0 PRJDB14274 8175 222 1.397516 3.10248552 root 1 Root_unresolved Root_unresolved 112 6.03e-27   NR MBT3273499.1 2026792 g8097 i0 66.2 17 74 25 100 0 222 1 357 430 MBT3273499.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [Spirochaetales bacterium] diamond 3774 113 0.991150442477876 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31359748 31359748 PRJDB14274_S_NODE_3456_length_330_cov_1.182156_g3378_i0 PRJDB14274 3456 330 1.182156 3.9011148 Opitutaceae bacterium 2006848 Bacteria Bacteria 44.7 0.0209   NR HRE83688.1 2006848 g3378 i0 38.1 0.572727272727273 63 38 56.4 1 238 53 401 463 HRE83688.1 prolyl oligopeptidase family serine peptidase [Opitutaceae bacterium] diamond 189 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31612653 31612653 PRJDB14274_S_NODE_7976_length_225_cov_1.170732_g7898_i0 PRJDB14274 7976 225 1.170732 2.634147 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 43.5 0.0153   NR MCU0781010.1 2562705 g7898 i0 36.5 0.693333333333333 52 24 69.3 1 188 33 284 326 MCU0781010.1 polyprenyl synthetase family protein [Akkermansiaceae bacterium] diamond 156 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
31928897 31928897 PRJDB14274_S_NODE_5637_length_264_cov_0.960591_g5559_i0 PRJDB14274 5637 264 0.960591 2.53596024 Candidatus Polarisedimenticolia bacterium 3069555 Bacteria Bacteria 95.1 7.24e-23   NR HKQ96897.1 3069555 g5559 i0 56.1 0.931818181818182 82 36 93.2 0 19 264 10 91 HKQ96897.1 formate--tetrahydrofolate ligase [Candidatus Polarisedimenticolia bacterium] diamond 246 95.1 1 Bacteria   Pseudomonadati Acidobacteriota Candidatus Polarisedimenticolia       Candidatus Polarisedimenticolia bacterium
32023948 32023948 PRJDB14274_S_NODE_7318_length_234_cov_1.618497_g7240_i0 PRJDB14274 7318 234 1.618497 3.78728298 Pseudomonadota bacterium 1977087 Bacteria Bacteria 110 3.71e-29   NR MEL6702586.1 1977087 g7240 i0 64.5 0.974358974358974 76 27 97.4 0 232 5 13 88 MEL6702586.1 uL14 family ribosomal protein [Pseudomonadota bacterium] diamond 228 110 1 Bacteria   Pseudomonadati Pseudomonadota         Pseudomonadota bacterium
32055434 32055434 PRJDB14274_S_NODE_3018_length_352_cov_1.340206_g2940_i0 PRJDB14274 3018 352 1.340206 4.71752512 Psychromonas sp. MB-3u-54 2058319 Bacteria Bacteria 45.1 0.0181   NR WP_101038493.1 2058319 g2940 i0 27.7 0.801136363636364 94 68 80.1 0 61 342 129 222 WP_101038493.1 efflux RND transporter periplasmic adaptor subunit [Psychromonas sp. MB-3u-54] diamond 282 45.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. MB-3u-54
32055441 32055441 PRJDB14274_S_NODE_7338_length_234_cov_1.202312_g7260_i0 PRJDB14274 7338 234 1.202312 2.81341008 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 82.4 3.3e-16   NR HEV3217645.1 2910147 g7260 i0 61 0.987179487179487 77 29 98.7 1 3 233 54 129 HEV3217645.1 NAD-dependent succinate-semialdehyde dehydrogenase [Vicinamibacterales bacterium] diamond 231 82.4 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32087176 32087176 PRJDB14274_S_NODE_1458_length_504_cov_2.171558_g1382_i0 PRJDB14274 1458 504 2.171558 10.94465232 Gammaproteobacteria bacterium 1913989 Bacteria Bacteria 47.4 0.00897   NR MCP3667323.1 1913989 g1382 i0 46.6 0.345238095238095 58 31 34.5 0 489 316 112 169 MCP3667323.1 hypothetical protein [Gammaproteobacteria bacterium] diamond 174 47.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;