RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB14274" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJDB14274 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15310656 15310656 PRJDB14274_S_NODE_6433_length_249_cov_1.037234_g6355_i0 PRJDB14274 6433 249 1.037234 2.58271266 Euglena gracilis 3039 Euglenozoa other_Eukaryota 129 7.21e-35   NR QLA09599.1 3039 g6355 i0 70.7 0.987951807228916 82 24 98.8 0 246 1 61 142 QLA09599.1 60S large subunit ribosomal protein uL2 [Euglena gracilis] diamond 246 129 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
29079326 29079326 PRJDB14274_S_NODE_8868_length_213_cov_1.282895_g8790_i0 PRJDB14274 8868 213 1.282895 2.73256635 Euglenozoa 33682 Euglenozoa other_Eukaryota 110 4.57e-29   NR QLA09595.1 3039 g8790 i0 87.3 1.63380281690141 55 7 77.5 0 185 21 98 152 QLA09595.1 40S small subunit ribosomal protein eS31 [Euglena gracilis] diamond 348 111 0.990990990990991 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;