RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB14274" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJDB14274 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30601004 30601004 PRJDB14274_S_NODE_10273_length_202_cov_0.921986_g10195_i0 PRJDB14274 10273 202 0.921986 1.86241172 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 52 1.16e-5   NR PRP88872.1 1890364 g10195 i0 54.5 0.816831683168317 55 24 80.2 1 29 190 156 210 PRP88872.1 hypothetical protein PROFUN_00340 [Planoprotostelium fungivorum] diamond 165 52 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31897324 31897324 PRJDB14274_S_NODE_8517_length_217_cov_2.070513_g8439_i0 PRJDB14274 8517 217 2.070513 4.49301321 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 49.3 1.32e-4   NR PRP86174.1 1890364 g8439 i0 47 1.90783410138249 66 30 84.3 1 198 16 504 569 PRP86174.1 ribosome biogenesis protein MAK21 [Planoprotostelium fungivorum] diamond 414 49.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31992221 31992221 PRJDB14274_S_NODE_9778_length_205_cov_1.791667_g9700_i0 PRJDB14274 9778 205 1.791667 3.67291735 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 67.8 1.72e-11   NR XP_012756456.1 1410327 g9700 i0 47.8 7.87317073170732 67 30 95.1 2 9 203 71 134 XP_012756456.1 hypothetical protein SAMD00019534_028690 [Acytostelium subglobosum LB1] diamond 1614 67.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;