RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB12578" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7660672 7660672 PRJDB12578_S_NODE_96447_length_304_cov_2.035294_g73389_i0 PRJDB12578 96447 304 2.035294 6.18729376 Trichobilharzia szidati 157070 Platyhelminthes Platyhelminthes 157 5.939999999999999e-43   NR CAH8858410.1 157070 g73389 i0 72.7 6.83881578947368 99 27 97.7 0 6 302 148 246 CAH8858410.1 unnamed protein product [Trichobilharzia szidati] diamond 2079 157 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia szidati
26715440 26715440 PRJDB12578_S_NODE_165761_length_189_cov_1.107143_g142703_i0 PRJDB12578 165761 189 1.107143 2.09250027 Opisthorchis felineus 147828 Platyhelminthes Platyhelminthes 43.5 0.00259   NR TGZ37688.1 147828 g142703 i0 50 0.571428571428571 36 18 57.1 0 154 47 51 86 TGZ37688.1 hypothetical protein CRM22_011324 [Opisthorchis felineus] diamond 108 43.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis felineus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;