RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB12578" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27406018 27406018 PRJDB12578_S_NODE_170023_length_185_cov_1.875000_g146965_i0 PRJDB12578 170023 185 1.875 3.46875 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 63.9 5.41e-10   NR XP_067784566.1 4785 g146965 i0 59.1 7.13513513513514 44 18 71.4 0 133 2 28 71 XP_067784566.1 Integrase catalytic core protein [Phytophthora cinnamomi] diamond 1320 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30380342 30380342 PRJDB12578_S_NODE_168813_length_186_cov_1.715328_g145755_i0 PRJDB12578 168813 186 1.715328 3.19051008 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00486   NR KAF0683602.1 120398 g145755 i0 38.2 0.887096774193548 55 34 88.7 0 17 181 199 253 KAF0683602.1 hypothetical protein As57867_024292 [Aphanomyces stellatus] diamond 165 44.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;