RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB12578" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12578 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28516799 28516799 PRJDB12578_S_NODE_107007_length_271_cov_1.626126_g83949_i0 PRJDB12578 107007 271 1.626126 4.40680146 Acropora millepora 45264 Cnidaria other_Eukaryota 57.8 2.37e-7   NR XP_029179584.2 45264 g83949 i0 40.4 3.49815498154982 89 42 90.8 3 4 249 44 128 XP_029179584.2 uncharacterized protein K02A2.6-like [Acropora millepora] diamond 948 57.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
29653074 29653074 PRJDB12578_S_NODE_188330_length_172_cov_1.268293_g165272_i0 PRJDB12578 188330 172 1.268293 2.18146396 Hydra vulgaris 6087 Cnidaria other_Eukaryota 42.4 0.0106   NR XP_065664686.1 6087 g165272 i0 44.6 2.70348837209302 56 31 97.7 0 169 2 23 78 XP_065664686.1 uncharacterized protein LOC136086320 [Hydra vulgaris] diamond 465 42.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
30506381 30506381 PRJDB12578_S_NODE_162813_length_191_cov_1.760563_g139755_i0 PRJDB12578 162813 191 1.760563 3.36267533 Hydra vulgaris 6087 Cnidaria other_Eukaryota 77 1.52e-14   NR XP_065647629.1 6087 g139755 i0 57.1 0.989528795811518 63 21 99 1 2 190 226 282 XP_065647629.1 uncharacterized protein LOC136077067 [Hydra vulgaris] diamond 189 77 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;