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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJDB12578" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12578 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27000536 27000536 PRJDB12578_S_NODE_104722_length_277_cov_1.947368_g81664_i0 PRJDB12578 104722 277 1.947368 5.39420936 Suricata suricatta 37032 Chordata Chordata 43.1 0.0412   NR XP_029786834.1 37032 g81664 i0 36.4 0.714801444043321 66 34 62.8 1 57 230 483 548 XP_029786834.1 cohesin subunit SA-2-like [Suricata suricatta] diamond 198 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Herpestidae Suricata Suricata suricatta
27285246 27285246 PRJDB12578_S_NODE_117363_length_248_cov_1.804020_g94305_i0 PRJDB12578 117363 248 1.80402 4.4739696 Myotis daubentonii 98922 Chordata Chordata 47.8 6.85e-4   NR XP_059554471.1 98922 g94305 i0 54.3 1.05241935483871 35 16 42.3 0 49 153 831 865 XP_059554471.1 bromodomain-containing protein 8 isoform X9 [Myotis daubentonii] diamond 261 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis daubentonii
29268488 29268488 PRJDB12578_S_NODE_189669_length_171_cov_1.672131_g166611_i0 PRJDB12578 189669 171 1.672131 2.85934401 Vespertilionidae 9431 Chordata Chordata 53.1 2.99e-6   NR KAF6336799.1 51298 g166611 i0 73.3 4.80701754385965 30 8 52.6 0 4 93 34 63 KAF6336799.1 hypothetical protein mMyoMyo1_012021 [Myotis myotis] diamond 822 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
29527153 29527153 PRJDB12578_S_NODE_104470_length_278_cov_1.462882_g81412_i0 PRJDB12578 104470 278 1.462882 4.06681196 Pelodiscus sinensis 13735 Chordata Chordata 53.1 5.71e-6   NR XP_025033872.1 13735 g81412 i0 59 0.420863309352518 39 16 42.1 0 162 278 74 112 XP_025033872.1 zinc finger MYM-type protein 5-like [Pelodiscus sinensis] diamond 117 53.1 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
29589905 29589905 PRJDB12578_S_NODE_157650_length_196_cov_1.061224_g134592_i0 PRJDB12578 157650 196 1.061224 2.07999904 Phrynocephalus forsythii 171643 Chordata Chordata 56.6 1.36e-7   NR KAJ7344823.1 171643 g134592 i0 55 9.18367346938776 60 20 87.2 3 3 173 96 151 KAJ7344823.1 hypothetical protein JRQ81_000773 [Phrynocephalus forsythii] diamond 1800 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Phrynocephalus Phrynocephalus forsythii
29906200 29906200 PRJDB12578_S_NODE_125191_length_234_cov_1.486486_g102133_i0 PRJDB12578 125191 234 1.486486 3.47837724 Hemicordylus capensis 884348 Chordata Chordata 43.1 0.024   NR XP_053145196.1 884348 g102133 i0 36.9 1.66666666666667 65 40 82.1 1 41 232 228 292 XP_053145196.1 dendrin isoform X2 [Hemicordylus capensis] diamond 390 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Cordylidae Hemicordylus Hemicordylus capensis
30917256 30917256 PRJDB12578_S_NODE_177834_length_179_cov_1.992308_g154776_i0 PRJDB12578 177834 179 1.992308 3.56623132 Rhabdornis inornatus 237438 Chordata Chordata 40.4 0.0437   NR NXH61994.1 237438 g154776 i0 43.6 0.653631284916201 39 22 65.4 0 42 158 56 94 NXH61994.1 LYPD3 protein [Rhabdornis inornatus] diamond 117 40.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Rhabdornithidae Rhabdornis Rhabdornis inornatus
31069388 31069388 PRJDB12578_S_NODE_205395_length_165_cov_0.887931_g182337_i0 PRJDB12578 205395 165 0.887931 1.46508615 Anura 8342 Chordata Chordata 70.5 2.04e-12   NR XP_040264739.1 8384 g182337 i0 67.3 8 55 16 96.4 1 161 3 177 231 XP_040264739.1 zinc finger MYM-type protein 1-like [Bufo bufo] diamond 1320 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
31644081 31644081 PRJDB12578_S_NODE_84397_length_363_cov_0.863057_g61339_i0 PRJDB12578 84397 363 0.863057 3.13289691 Bufotes viridis 30338 Chordata Chordata 45.4 0.0148   NR CAK8629749.1 30338 g61339 i0 64.7 0.28099173553719 34 12 28.1 0 192 91 331 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 102 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31897307 31897307 PRJDB12578_S_NODE_79437_length_398_cov_1.653295_g56380_i0 PRJDB12578 79437 398 1.653295 6.5801141 Mustela nigripes 77151 Chordata Chordata 50.4 3.36e-4   NR XP_059238664.1 77151 g56380 i0 75 0.422110552763819 28 7 21.1 0 7 90 45 72 XP_059238664.1 LOW QUALITY PROTEIN: zinc finger protein 502-like [Mustela nigripes] diamond 168 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela nigripes
32781990 32781990 PRJDB12578_S_NODE_111840_length_259_cov_3.061905_g88782_i0 PRJDB12578 111840 259 3.061905 7.93033395 Ornithorhynchus anatinus 9258 Chordata Chordata 43.5 0.0249   NR XP_028912852.1 9258 g88782 i0 32.9 2.40926640926641 70 42 75.3 1 58 252 657 726 XP_028912852.1 lysosomal alpha-glucosidase isoform X1 [Ornithorhynchus anatinus] diamond 624 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;