RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJDB12578" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29205724 29205724 PRJDB12578_S_NODE_205109_length_165_cov_0.896552_g182051_i0 PRJDB12578 205109 165 0.896552 1.4793108 Bacteria 2 Bacteria Bacteria 85.9 1.45e-19   NR PIS00683.1 1973935 g182051 i0 72.2 2.94545454545455 54 15 98.2 0 164 3 73 126 PIS00683.1 MAG: DNA-binding protein [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9] diamond 486 86.7 0.990772779700115 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9
31391331 31391331 PRJDB12578_S_NODE_163656_length_190_cov_2.907801_g140598_i0 PRJDB12578 163656 190 2.907801 5.5248219 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.2 1.9e-11   NR MBU6180405.1 2026799 g140598 i0 56.1 0.9 57 25 90 0 16 186 2 58 MBU6180405.1 peptidylprolyl isomerase [Verrucomicrobiota bacterium] diamond 171 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;