RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJDB12134" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJDB12134 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27506556 27506556 PRJDB12134_P_NODE_13203_length_248_cov_0.891429_g13068_i0 PRJDB12134 13203 248 0.891429 2.21074392 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 54.7 1.7e-6   NR MCC6874568.1 2510337 g13068 i0 59.5 1.4758064516129 42 17 50.8 0 2 127 201 242 MCC6874568.1 CBS domain-containing protein [Sandaracinaceae bacterium] diamond 366 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
31169565 31169565 PRJDB12134_P_NODE_14115_length_243_cov_0.917647_g13980_i0 PRJDB12134 14115 243 0.917647 2.22988221 Byssovorax sp. 2927945 Bacteria Bacteria 71.6 2.42e-12   NR MFO0760762.1 2927945 g13980 i0 57.1 0.950617283950617 77 33 95.1 0 241 11 523 599 MFO0760762.1 VWA domain-containing protein [Byssovorax sp.] diamond 231 71.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
31802174 31802174 PRJDB12134_P_NODE_14217_length_243_cov_0.900000_g14082_i0 PRJDB12134 14217 243 0.9 2.187 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 147 1.1e-41   NR MBI2388921.1 2026735 g14082 i0 90.1 1 81 8 100 0 1 243 49 129 MBI2388921.1 tetratricopeptide repeat protein [Deltaproteobacteria bacterium] diamond 243 147 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;