RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn" and tax_phylum = "Candidatus Giovannoniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 7 ✖

tax_clade 1

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
129585 129585 PRJEB64798_P_NODE_79521_length_215_cov_15.186747_g77755_i0 PRJEB64798 79521 215 15.186747 32.65150605 Candidatus Giovannonibacteria bacterium GW2011_GWB1_43_13 1618651 Bacteria Bacteria 204 4.949999999999999e-48   NTclustered gi|1118703487|gb|KX123400.1| 1618651 g77755 i0 85.784 86.2651162790698 204 16 95 2 12 215 1670 1860 Candidatus Giovannonibacteria bacterium GW2011_GWB1_43_13 16S ribosomal RNA gene, partial sequence blastn 18547 204 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium GW2011_GWB1_43_13
8254480 8254480 PRJNA630162_P_NODE_101687_length_184_cov_4.762963_g100164_i0 PRJNA630162 101687 184 4.762963 8.76385192 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 97.1 7.15e-16   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g100164 i0 78.523 1.42934782608696 149 31 81 1 31 179 311310 311163 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 263 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium
14458859 14458859 PRJNA432257_S_NODE_67592_length_206_cov_4.698225_g67211_i0 PRJNA432257 67592 206 4.698225 9.6783435 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 119 1.75e-22   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g67211 i0 79.29 0.820388349514563 169 35 82 0 34 202 172783 172615 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 169 119 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium
16949192 16949192 PRJNA283169_S_NODE_3074_length_167_cov_0.152542_g3060_i0 PRJNA283169 3074 167 0.152542 0.25474514 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 102 1.37e-17   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g3060 i0 86.316 32.8982035928144 95 11 76 2 75 167 310136 310042 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 5494 102 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium
20052986 20052986 PRJNA946307_P_NODE_151136_length_164_cov_3.269565_g150262_i0 PRJNA946307 151136 164 3.269565 5.3620866 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 58.4 2.94e-4   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g150262 i0 100 0.359756097560976 31 0 19 0 50 80 184496 184526 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 59 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium
20528565 20528565 PRJEB64798_P_NODE_185557_length_172_cov_3.105691_g183791_i0 PRJEB64798 185557 172 3.105691 5.34178852 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 93.5 8.5e-15   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g183791 i0 98.113 13.3197674418605 53 1 31 0 115 167 310521 310573 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 2291 93.5 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium
23079132 23079132 PRJEB64798_P_NODE_153679_length_186_cov_10.306569_g151913_i0 PRJEB64798 153679 186 10.306569 19.17021834 Candidatus Giovannonibacteria bacterium 2053557 Bacteria Bacteria 139 1.19e-28   NTclustered gi|1950811264|gb|CP066687.1| 2053557 g151913 i0 82.692 1.6989247311828 156 27 84 0 9 164 310835 310990 MAG: Candidatus Giovannonibacteria bacterium isolate NC_groundwater_467_Ag_B-0.1um_47_26 chromosome blastn 316 139 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;