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contig_metadata

15 rows where analysis = "blastn", tax_kingdom = "Viridiplantae" and tax_phylum = "Prasinodermophyta"

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tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 15 ✖

tax_kingdom 1

  • Viridiplantae · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
346556 346556 PRJNA1237888_S_NODE_6561_length_166_cov_1.333333_g6511_i0 PRJNA1237888 6561 166 1.333333 2.21333278 Prasinoderma coloniale 156133 Plants Plants 65.8 1.79e-6   NTclustered gi|575925518|ref|NC_023355.1| 156133 g6511 i0 100 54.3072289156626 35 0 21 0 1 35 23398 23432 Prasinoderma coloniale culture-collection CCMP:1220 mitochondrion, complete genome blastn 9015 65.8 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
2229987 2229987 PRJNA980585_P_NODE_24062_length_301_cov_0.842105_g23808_i0 PRJNA980585 24062 301 0.842105 2.53473605 Prasinoderma coloniale 156133 Plants Plants 385 2.43e-102   NTclustered gi|308035628|dbj|AB491666.1| 156133 g23808 i0 89.701 95.4086378737542 301 31 100 0 1 301 49 349 Prasinoderma coloniale Btub gene for beta-tubulin, partial cds, strain: MBIC10720 blastn 28718 385 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
5813865 5813865 PRJNA722925_S_NODE_8385_length_167_cov_0.900000_g8322_i0 PRJNA722925 8385 167 0.9 1.503 Prasinoderma singulare 676789 Plants Plants 126 8.14e-25   NTclustered gi|1812623613|gb|MT111932.1| 676789 g8322 i0 86.179 49.3353293413174 123 10 72 7 44 163 139 21 Prasinoderma singulare strain RCC927 small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 8239 126 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma singulare
6096497 6096497 PRJEB64798_P_NODE_243385_length_154_cov_3.057143_g241619_i0 PRJEB64798 243385 154 3.057143 4.70800022 Prasinoderma 156132 Plants Plants 137 3.39e-28   NTclustered gi|371782111|emb|HE610143.1| 156133 g241619 i0 91.089 36.4025974025974 101 9 98 0 54 154 783 883 Prasinoderma coloniale partial 28S rRNA gene, strain CCMP1413 blastn 5606 137 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
6152329 6152329 PRJNA1237347_P_NODE_566385_length_226_cov_4.320261_g559811_i0 PRJNA1237347 566385 226 4.320261 9.76378986 Viridiplantae 33090 Plants Plants 124 4.2e-24   NTclustered gi|371782109|emb|HE610141.1| 156131 g559811 i0 91.209 40.3451327433628 91 8 40 0 136 226 2257 2167 Prasinococcus capsulatus 5.8S rRNA gene, 28S rRNA gene (partial) and ITS2, strain CCMP1202 blastn 9118 124 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus capsulatus
6397171 6397171 PRJEB11748_P_NODE_382846_length_177_cov_8.327586_g380663_i0 PRJEB11748 382846 177 8.327586 14.73982722 Prasinococcus capsulatus 156131 Plants Plants 71.3 4.13e-8   NTclustered gi|371782109|emb|HE610141.1| 156131 g380663 i0 97.561 26.135593220339 41 1 23 0 114 154 2003 1963 Prasinococcus capsulatus 5.8S rRNA gene, 28S rRNA gene (partial) and ITS2, strain CCMP1202 blastn 4626 71.3 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus capsulatus
9530037 9530037 PRJNA630162_P_NODE_125328_length_171_cov_4.885246_g123805_i0 PRJNA630162 125328 171 4.885246 8.35377066 Prasinococcus capsulatus 156131 Plants Plants 71.3 3.95e-8   NTclustered gi|371782109|emb|HE610141.1| 156131 g123805 i0 75.294 26.672514619883 170 31 97 10 1 166 2403 2241 Prasinococcus capsulatus 5.8S rRNA gene, 28S rRNA gene (partial) and ITS2, strain CCMP1202 blastn 4561 71.3 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus capsulatus
10805837 10805837 PRJNA630162_P_NODE_137889_length_167_cov_2.118644_g136366_i0 PRJNA630162 137889 167 2.118644 3.5381354800000002 Verdigellas peltata 542676 Plants Plants 87.9 3.84e-13   NTclustered gi|1026942297|emb|LT174528.1| 542676 g136366 i0 79.545 89.748502994012 132 20 76 7 6 132 4203 4332 Verdigellas peltata LAF:8-26-12-6-1 complete nuclear ribosomal DNA unit blastn 14988 87.9 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Verdigellas Verdigellas peltata
11914103 11914103 PRJNA438687_S_NODE_7090_length_163_cov_5.656250_g7000_i0 PRJNA438687 7090 163 5.65625 9.2196875 Prasinoderma coloniale 156133 Plants Plants 67.6 4.85e-7   NTclustered gi|371782111|emb|HE610143.1| 156133 g7000 i0 100 21.6871165644172 36 0 22 0 1 36 1848 1883 Prasinoderma coloniale partial 28S rRNA gene, strain CCMP1413 blastn 3535 67.6 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
15971456 15971456 PRJNA689790_S_NODE_2633_length_392_cov_1.411268_g2518_i0 PRJNA689790 2633 392 1.411268 5.53217056 Prasinococcus sp. CCMP1194 110672 Plants Plants 187 9.849999999999999e-43   NTclustered gi|1778215561|gb|MN662312.1| 110672 g2518 i0 84.865 8.59948979591837 185 28 47 0 1 185 6783 6967 Prasinococcus sp. CCMP1194 mitochondrion, complete genome blastn 3371 187 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194
21005281 21005281 PRJNA630162_P_NODE_99997_length_185_cov_3.941176_g98474_i0 PRJNA630162 99997 185 3.941176 7.2911756 Verdigellas peltata 542676 Plants Plants 63.9 7.3e-6   NTclustered gi|1026942297|emb|LT174528.1| 542676 g98474 i0 83.099 4.25405405405405 71 11 38 1 24 93 5584 5654 Verdigellas peltata LAF:8-26-12-6-1 complete nuclear ribosomal DNA unit blastn 787 63.9 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Verdigellas Verdigellas peltata
21326399 21326399 PRJNA944406_P_NODE_18897_length_302_cov_1.925764_g17938_i0 PRJNA944406 18897 302 1.925764 5.81580728 Prasinoderma singulare 676789 Plants Plants 196 1.23e-45   NTclustered gi|1812772022|gb|MT117945.1| 676789 g17938 i0 93.284 43.7317880794702 134 7 44 2 59 191 4776 4644 Prasinoderma singulare strain RCC927 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13207 196 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma singulare
23203218 23203218 PRJNA1120060_P_NODE_2379939_length_258_cov_2.145946_g2361874_i0 PRJNA1120060 2379939 258 2.145946 5.53654068 Verdigellas peltata 542676 Plants Plants 54.7 0.007   NTclustered gi|1031917306|ref|NC_030220.1| 542676 g2361874 i0 96.97 0.248062015503876 33 0 13 1 53 85 74202 74171 Verdigellas peltata LAF:8-26-12-6-1 chloroplast blastn 64 54.7 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Verdigellas Verdigellas peltata
23423099 23423099 PRJNA493827_P_NODE_154599_length_275_cov_3.871287_g152401_i0 PRJNA493827 154599 275 3.871287 10.64603925 Verdigellas peltata 542676 Plants Plants 196 1.1e-45   NTclustered gi|1031917306|ref|NC_030220.1| 542676 g152401 i0 82.667 73.16 225 35 81 4 1 223 56296 56074 Verdigellas peltata LAF:8-26-12-6-1 chloroplast blastn 20119 196 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Verdigellas Verdigellas peltata
23945301 23945301 PRJEB64798_P_NODE_155119_length_186_cov_1.445255_g153353_i0 PRJEB64798 155119 186 1.445255 2.6881743 root 1 Root_unresolved Root_unresolved 82.4 2.03e-11   NTclustered gi|290770777|emb|FN563089.1| 156133 g153353 i0 78.462 31.7741935483871 130 24 69 4 53 181 2322 2196 Prasinoderma coloniale plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain CCMP 1413 blastn 5910 82.4 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;