RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn" and tax_clade = "SAR202 cluster"

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bioproject 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7779155 7779155 PRJEB64798_P_NODE_123207_length_204_cov_2.761290_g121441_i0 PRJEB64798 123207 204 2.76129 5.6330316 Candidatus Lucifugimonas marina 3038979 Bacteria Bacteria 124 3.72e-24   NTclustered gi|2476246254|gb|CP046146.1| 3038979 g121441 i0 91.209 218.328431372549 91 8 45 0 6 96 583470 583380 Candidatus Lucifugimonas marina strain JH545 chromosome, complete genome blastn 44539 124 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia Candidatus Lucifugimonadales Candidatus Lucifugimonadaceae Candidatus Lucifugimonas Candidatus Lucifugimonas marina
9054384 9054384 PRJEB64798_P_NODE_149628_length_188_cov_14.352518_g147862_i0 PRJEB64798 149628 188 14.352518 26.98273384 Candidatus Lucifugimonas marina 3038979 Bacteria Bacteria 82.4 2.05e-11   NTclustered gi|2476246254|gb|CP046146.1| 3038979 g147862 i0 97.872 1.43085106382979 47 1 25 0 24 70 583261 583215 Candidatus Lucifugimonas marina strain JH545 chromosome, complete genome blastn 269 82.4 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia Candidatus Lucifugimonadales Candidatus Lucifugimonadaceae Candidatus Lucifugimonas Candidatus Lucifugimonas marina
18146167 18146167 PRJNA1148190_P_NODE_35155_length_1130_cov_2.686850_g25060_i0 PRJNA1148190 35155 1130 2.68685 30.361405 Candidatus Lucifugimonas marina 3038979 Bacteria Bacteria 78.7 1.9e-9   NTclustered gi|2476246254|gb|CP046146.1| 3038979 g25060 i0 92.593 0.849557522123894 54 4 5 0 140 193 627111 627058 Candidatus Lucifugimonas marina strain JH545 chromosome, complete genome blastn 960 78.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia Candidatus Lucifugimonadales Candidatus Lucifugimonadaceae Candidatus Lucifugimonas Candidatus Lucifugimonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;