RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA999747" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999747 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1274176 1274176 PRJNA999747_S_NODE_1161_length_277_cov_3.394309_g1129_i0 PRJNA999747 1161 277 3.394309 9.40223593 Mucorales 4827 Fungi Fungi 71.3 7.04e-8   NTclustered gi|82398553|gb|DQ273817.1| 4846 g1129 i0 84 3.01805054151625 75 10 27 2 11 84 1587 1660 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 836 71.3 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
14027991 14027991 PRJNA999747_S_NODE_1271_length_268_cov_193.738397_g1239_i0 PRJNA999747 1271 268 193.738397 519.21890396 Fungi 4751 Fungi Fungi 449 7.450000000000001e-122   NTclustered gi|658131632|emb|HF968958.1| 4874 g1239 i0 99.197 104.537313432836 249 2 93 0 4 252 2008 2256 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 28016 449 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
16283324 16283324 PRJNA999747_S_NODE_2113_length_209_cov_71.865169_g2081_i0 PRJNA999747 2113 209 71.865169 150.19820321 uncultured Glomeromycotina 241622 Fungi Fungi 357 3.47e-94   NTclustered gi|2415612110|gb|MZ480635.1| 241622 g2081 i0 97.596 98.7751196172249 208 5 99 0 2 209 68 275 Uncultured Glomeromycotina clone CHTACBSHOTU0885 small subunit ribosomal RNA gene, partial sequence blastn 20644 357 1 Eukaryota Opisthokonta Fungi Mucoromycota         uncultured Glomeromycotina
25206668 25206668 PRJNA999747_S_NODE_1280_length_267_cov_20.127119_g1248_i0 PRJNA999747 1280 267 20.127119 53.73940773 Diversispora sp. EE1 1202552 Fungi Fungi 100 8.6e-17   NTclustered gi|442866411|emb|HE863895.1| 1202552 g1248 i0 77.66 30.7116104868914 188 26 66 12 4 178 1390 1574 Diversispora sp. EE1 genomic DNA containing 28S rRNA gene, strain EE1, isolate spore 3, clone AL2_45_24 blastn 8200 100 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Diversisporaceae Diversispora Diversispora sp. EE1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;