RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA999747" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999747 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2549869 2549869 PRJNA999747_S_NODE_242_length_484_cov_3.269316_g215_i0 PRJNA999747 242 484 3.269316 15.82348944 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 69.4 4.68e-7   NTclustered gi|2506304296|ref|XR_008789413.1| 6465 g215 i0 81.609 3.08677685950413 87 12 18 2 63 147 1715 1799 PREDICTED: Patella vulgata large subunit ribosomal RNA (LOC130014397), rRNA blastn 1494 69.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
5102392 5102392 PRJNA999747_S_NODE_844_length_312_cov_7.288256_g812_i0 PRJNA999747 844 312 7.288256 22.73935872 Metazoa 33208 Mollusca Mollusca 237 7.5e-58   NTclustered gi|18565103|dbj|AB071191.1| 29159 g812 i0 82.955 66.4487179487179 264 43 84 2 50 312 34 296 Crassostrea gigas actin 2 mRNA for Actin 2, complete cds blastn 20732 237 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
6083775 6083775 PRJNA999747_S_NODE_2725_length_188_cov_3.159236_g2693_i0 PRJNA999747 2725 188 3.159236 5.93936368 Patella vulgata 6465 Mollusca Mollusca 174 3.3e-39   NTclustered gi|2506322169|ref|XM_050547105.2| 6465 g2693 i0 83.871 27.2127659574468 186 26 98 4 5 188 787 970 PREDICTED: Patella vulgata transitional endoplasmic reticulum ATPase (LOC126819200), mRNA blastn 5116 174 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;