RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA999747" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA999747 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8927031 8927031 PRJNA999747_S_NODE_3767_length_163_cov_1.522727_g3735_i0 PRJNA999747 3767 163 1.522727 2.48204501 Leptotrichia 32067 Bacteria Bacteria 292 7.35e-75   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g3735 i0 99.379 114.220858895706 161 1 99 0 3 163 1756710 1756550 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 18618 292 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
8927040 8927040 PRJNA999747_S_NODE_567_length_358_cov_185.201835_g535_i0 PRJNA999747 567 358 185.201835 663.0225693 Cetobacterium 180162 Bacteria Bacteria 632 9.52e-177   NTclustered gi|2666488225|gb|CP143319.1| 188913 g535 i0 98.599 497.617318435754 357 5 99 0 2 358 1805032 1804676 Cetobacterium somerae strain ceto chromosome, complete genome blastn 178147 638 0.990595611285266 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11183884 11183884 PRJNA999747_S_NODE_169_length_543_cov_22.765625_g144_i0 PRJNA999747 169 543 22.765625 123.61734375 Cetobacterium somerae 188913 Bacteria Bacteria 963 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g144 i0 98.889 524.388581952118 540 5 99 1 1 540 49409 48871 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 284743 963 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20400564 20400564 PRJNA999747_S_NODE_3776_length_162_cov_21.358779_g3744_i0 PRJNA999747 3776 162 21.358779 34.60122198 Fusobacterium 848 Bacteria Bacteria 259 7.400000000000001e-65   NTclustered gi|1243298346|dbj|AP017968.1| 856 g3744 i0 96.203 517.043209876543 158 6 98 0 2 159 1622384 1622227 Fusobacterium varium Fv113-g1 DNA, complete genome blastn 83761 261 0.992337164750958 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;