RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA999043" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA999043 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9908044 9908044 PRJNA999043_P_NODE_23908_length_244_cov_0.900585_g23813_i0 PRJNA999043 23908 244 0.900585 2.1974274 Lawsonella clevelandensis 1528099 Bacteria Bacteria 313 9.139999999999999e-81   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g23813 i0 89.754 104.717213114754 244 25 100 0 1 244 1269799 1270042 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 25551 313 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
15007688 15007688 PRJNA999043_P_NODE_22892_length_247_cov_0.885057_g22797_i0 PRJNA999043 22892 247 0.885057 2.18609079 Streptomyces sp. AM 3-1-1 3028711 Bacteria Bacteria 451 1.88e-122   NTclustered gi|2455049964|gb|CP119149.1| 3028711 g22797 i0 99.595 82.82995951417 247 1 100 0 1 247 36402 36648 Streptomyces sp. AM 3-1-1 chromosome, complete genome blastn 20459 451 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AM 3-1-1
19125350 19125350 PRJNA999043_P_NODE_21115_length_255_cov_1.719780_g21020_i0 PRJNA999043 21115 255 1.71978 4.385439 Cutibacterium 1912216 Bacteria Bacteria 466 6.98e-127   NTclustered gi|1446500593|gb|CP031442.1| 1747 g21020 i0 99.608 272.360784313726 255 1 100 0 1 255 55776 55522 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 69452 466 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;