RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA998413" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA998413 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8632237 8632237 PRJNA998413_S_NODE_3587_length_303_cov_2.383333_g3556_i0 PRJNA998413 3587 303 2.383333 7.22149899 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 322 1.95e-83   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g3556 i0 85.855 515.749174917492 304 42 100 1 1 303 2827554 2827857 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 156272 322 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
16281895 16281895 PRJNA998413_S_NODE_1273_length_416_cov_2.606232_g1242_i0 PRJNA998413 1273 416 2.606232 10.84192512 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 372 2.6999999999999995e-98   NTclustered gi|2893356046|emb|OZ220469.1| 3069543 g1242 i0 84.334 173.668269230769 383 57 92 3 10 391 2202107 2202487 MAG: Phototrophicaceae bacterium isolate 149760b3-584d-4ebc-81cd-1236e649b30c genome assembly, chromosome: 1 blastn 72246 372 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;