RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA994052 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4804098 4804098 PRJNA994052_P_NODE_19404_length_310_cov_17.611814_g18181_i0 PRJNA994052 19404 310 17.611814 54.5966234 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 108 6.09e-19   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g18181 i0 83.478 0.474193548387097 115 19 37 0 2 116 2448190 2448076 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 147 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
4804273 4804273 PRJNA994052_P_NODE_35884_length_267_cov_43.051546_g34638_i0 PRJNA994052 35884 267 43.051546 114.94762782 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 339 1.6699999999999998e-88   NTclustered gi|2874254096|emb|OY970179.1| 412056 g34638 i0 89.668 69.7827715355805 271 21 100 5 1 267 1728723 1728990 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 18632 339 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
4804470 4804470 PRJNA994052_P_NODE_51204_length_239_cov_36.493976_g49949_i0 PRJNA994052 51204 239 36.493976 87.22060264 Opitutus sp. GAS368 1882749 Bacteria Bacteria 351 1.89e-92   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g49949 i0 95.067 5.61924686192469 223 11 93 0 1 223 2195101 2195323 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 1343 351 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
8629469 8629469 PRJNA994052_P_NODE_41967_length_255_cov_6.824176_g40720_i0 PRJNA994052 41967 255 6.824176 17.4016488 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 263 9.83e-66   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g40720 i0 85.49 5.42745098039216 255 33 99 4 3 255 1381445 1381697 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 1384 263 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
9904412 9904412 PRJNA994052_P_NODE_22368_length_303_cov_5.952174_g21140_i0 PRJNA994052 22368 303 5.952174 18.03508722 uncultured Opitutus sp. 296825 Bacteria Bacteria 339 1.93e-88   NTclustered gi|310754759|gb|HQ212649.1| 296825 g21140 i0 86.557 50.5577557755776 305 23 96 12 8 299 866 567 Uncultured Opitutus sp. clone 1_N02 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 15319 339 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus uncultured Opitutus sp.
13730079 13730079 PRJNA994052_P_NODE_53391_length_235_cov_3559.271605_g52136_i0 PRJNA994052 53391 235 3559.271605 8364.28827175 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 285 1.91e-72   NTclustered gi|2874254096|emb|OY970179.1| 412056 g52136 i0 89.427 19.3489361702128 227 23 97 1 9 235 1729011 1729236 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 4547 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15004743 15004743 PRJNA994052_P_NODE_72152_length_210_cov_6.160584_g70896_i0 PRJNA994052 72152 210 6.160584 12.9372264 Opitutales bacterium 2026772 Bacteria Bacteria 161 2.93e-35   NTclustered gi|2814788334|emb|OY762281.2| 2026772 g70896 i0 81.818 87.8428571428571 198 30 92 5 4 196 976877 976681 MAG: Opitutales bacterium isolate 685e4509-010e-4797-9872-a51ee4494a19 genome assembly, chromosome: 1 blastn 18447 161 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;