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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA994052 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
976518 976518 PRJNA994052_P_NODE_47941_length_244_cov_92.432749_g46689_i0 PRJNA994052 47941 244 92.432749 225.53590756 uncultured Chytridiomycota 175247 Fungi Fungi 228 3.409999999999999e-55   NTclustered gi|311409149|gb|HQ219386.1| 175247 g46689 i0 84.348 84.0532786885246 230 24 94 5 13 242 1050 833 Uncultured Chytridiomycota clone AY2009A6 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20509 228 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
5101384 5101384 PRJNA994052_P_NODE_46164_length_247_cov_90.396552_g44913_i0 PRJNA994052 46164 247 90.396552 223.27948344 Chytridiomycetes 451435 Fungi Fungi 185 2.11e-42   NTclustered gi|268636506|gb|FJ827648.1| 64516 g44913 i0 99.029 82.5668016194332 103 1 83 0 143 245 912 810 Phlyctochytrium californicum voucher CBS 667.73 18S ribosomal RNA gene, partial sequence blastn 20394 185 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium californicum
6079278 6079278 PRJNA994052_P_NODE_10305_length_336_cov_156.517110_g9099_i0 PRJNA994052 10305 336 156.51711 525.8974896 Asterophlyctis sp. 2750428 Fungi Fungi 54.7 0.009   NTclustered gi|1866582725|gb|MT730900.1| 2750428 g9099 i0 100 0.172619047619048 29 0 9 0 239 267 4348 4320 Asterophlyctis sp. isolate JEL0934 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 58 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Asterophlyctis Asterophlyctis sp.
8629589 8629589 PRJNA994052_P_NODE_52787_length_236_cov_251.073620_g51532_i0 PRJNA994052 52787 236 251.07362 592.5337432 Asterophlyctis sp. 2750428 Fungi Fungi 54.7 0.006   NTclustered gi|1866582725|gb|MT730900.1| 2750428 g51532 i0 100 0.245762711864407 29 0 12 0 70 98 4320 4348 Asterophlyctis sp. isolate JEL0934 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 58 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Asterophlyctis Asterophlyctis sp.
8926089 8926089 PRJNA994052_P_NODE_65847_length_218_cov_6.206897_g64591_i0 PRJNA994052 65847 218 6.206897 13.53103546 Chytridiomycetes 451435 Fungi Fungi 141 4e-29   NTclustered gi|311235598|ref|NG_027613.1| 110093 g64591 i0 92.929 110.270642201835 99 3 78 4 122 218 1640 1544 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 24039 141 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9904244 9904244 PRJNA994052_P_NODE_10668_length_333_cov_161.446154_g9460_i0 PRJNA994052 10668 333 161.446154 537.61569282 Asterophlyctis sp. 2750428 Fungi Fungi 54.7 0.009   NTclustered gi|1866582725|gb|MT730900.1| 2750428 g9460 i0 100 0.174174174174174 29 0 9 0 70 98 4320 4348 Asterophlyctis sp. isolate JEL0934 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 58 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Asterophlyctis Asterophlyctis sp.
25499657 25499657 PRJNA994052_P_NODE_57620_length_229_cov_100.679487_g56364_i0 PRJNA994052 57620 229 100.679487 230.55602523 Chytridiomycetes 451435 Fungi Fungi 185 1.9299999999999994e-42   NTclustered gi|268636506|gb|FJ827648.1| 64516 g56364 i0 99.029 86.4454148471616 103 1 86 0 3 105 810 912 Phlyctochytrium californicum voucher CBS 667.73 18S ribosomal RNA gene, partial sequence blastn 19796 185 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium californicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;