RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2252053 2252053 PRJNA994052_P_NODE_71662_length_210_cov_58.744526_g70406_i0 PRJNA994052 71662 210 58.744526 123.3635046 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 76.8 1.09e-9   NTclustered gi|2626216229|emb|OY821634.1| 2026734 g70406 i0 85.333 6.23809523809524 75 10 35 1 135 208 2458634 2458560 MAG: Dehalococcoidia bacterium isolate 1c9b0e2f-99e9-4817-8d5d-eeea35646e5a genome assembly, chromosome: 1 blastn 1310 76.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
4804780 4804780 PRJNA994052_P_NODE_81064_length_199_cov_90.896825_g79807_i0 PRJNA994052 81064 199 90.896825 180.88468175 Aggregatilineales bacterium 2952883 Bacteria Bacteria 147 7.699999999999999e-31   NTclustered gi|2621701266|emb|OY759986.1| 2952883 g79807 i0 81.319 8.57788944723618 182 32 91 2 12 192 53594 53414 MAG: Aggregatilineales bacterium isolate 77605d95-9063-427a-b0a2-1f26f0f1d72f genome assembly, chromosome: 1 blastn 1707 147 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;