RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3825153 3825153 PRJNA994052_P_NODE_55123_length_233_cov_27.550000_g53868_i0 PRJNA994052 55123 233 27.55 64.1915 Bacteria 2 Bacteria Bacteria 429 8.239999999999998e-116   NTclustered gi|1293068907|gb|MF134832.1| 195 g53868 i0 100 54.7639484978541 232 0 99 0 1 232 1277 1046 Campylobacter coli strain ZTA14/01426 aminoglycoside 2-phosphotransferase IIIa (aph(2)-IIIa), 3-aminoglycoside o-phosphotransferase type IIIa (aph(3)-IIIa), phosphorylase (pnp), spectinomyicin adenyltransferase (aad9), erythromycin resistance methylase B (erm(B)), and Aad6 (aad6) genes, complete cds blastn 12760 429 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
6377398 6377398 PRJNA994052_P_NODE_76925_length_204_cov_22.664122_g75668_i0 PRJNA994052 76925 204 22.664122 46.23480888 root 1 Root_unresolved Root_unresolved 377 2.59e-100   NTclustered gi|2562786027|gb|CP120256.1| 197 g75668 i0 100 124 204 0 100 0 1 204 1480998 1481201 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 25296 377 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;