RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA994052 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12455763 12455763 PRJNA994052_P_NODE_54190_length_234_cov_113.913043_g52935_i0 PRJNA994052 54190 234 113.913043 266.55652062 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 300 6.78e-77   NTclustered gi|2874253692|emb|OY969418.1| 171953 g52935 i0 90.393 155.837606837607 229 20 97 2 1 228 4233972 4233745 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 36466 300 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
12752541 12752541 PRJNA994052_P_NODE_71810_length_210_cov_32.072993_g70554_i0 PRJNA994052 71810 210 32.072993 67.3532853 Luteitalea 2004797 Bacteria Bacteria 132 2.3e-26   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g70554 i0 89.423 88.4857142857143 104 11 50 0 1 104 653274 653377 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 18582 132 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
15301047 15301047 PRJNA994052_P_NODE_51572_length_238_cov_331.424242_g50317_i0 PRJNA994052 51572 238 331.424242 788.78969596 Bacteria 2 Bacteria Bacteria 217 7.159999999999999e-52   NTclustered gi|112980876|gb|DQ829680.1| 171953 g50317 i0 83.913 109.109243697479 230 33 96 4 4 232 14 240 Uncultured Acidobacteria bacterium clone DON6 23S ribosomal RNA gene, partial sequence blastn 25968 217 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18828373 18828373 PRJNA994052_P_NODE_52775_length_236_cov_335.441718_g51520_i0 PRJNA994052 52775 236 335.441718 791.64245448 Terriglobia bacterium 2081523 Bacteria Bacteria 198 2.57e-46   NTclustered gi|2874253966|emb|OY970291.1| 2081523 g51520 i0 82.533 97.1101694915254 229 37 97 3 4 231 142962 142736 MAG: Terriglobia bacterium isolate MFD05513.bin.c.1 genome assembly, chromosome: 1 blastn 22918 198 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
22653686 22653686 PRJNA994052_P_NODE_54238_length_234_cov_77.913043_g52983_i0 PRJNA994052 54238 234 77.913043 182.31652062 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 222 1.51e-53   NTclustered gi|2874253692|emb|OY969418.1| 171953 g52983 i0 84.416 111.782051282051 231 31 98 5 4 233 4233745 4233971 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 26157 222 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25202820 25202820 PRJNA994052_P_NODE_62840_length_222_cov_8.751678_g61584_i0 PRJNA994052 62840 222 8.751678 19.42872516 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 52.8 0.02   NTclustered gi|2891482077|emb|OZ219816.1| 2793154 g61584 i0 100 0.126126126126126 28 0 13 0 124 151 759079 759052 MAG: Vicinamibacteria bacterium isolate 9f2a63bf-6400-4679-989b-6d6b125ab8ea genome assembly, chromosome: 2 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;