RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15004471 15004471 PRJNA994052_P_NODE_47772_length_245_cov_4.366279_g46521_i0 PRJNA994052 47772 245 4.366279 10.69738355 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 6.11e-8   NTclustered gi|2560502367|emb|OY629453.1| 2697049 g46521 i0 89.474 18.5959183673469 57 4 22 1 97 151 5915 5971 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4556 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17554175 17554175 PRJNA994052_P_NODE_28594_length_285_cov_139.136792_g27352_i0 PRJNA994052 28594 285 139.136792 396.5398572 Potyvirus capsivenamaculae 3240493 Viruses Viruses 455 1.72e-123   NTclustered gi|2148247635|gb|OK181760.1| 52280 g27352 i0 97.037 26.2982456140351 270 8 95 0 3 272 7888 8157 Chilli veinal mottle virus isolate DSMZ PV-0255, complete genome blastn 7495 455 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus capsivenamaculae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;