RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA994052 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
976870 976870 PRJNA994052_P_NODE_80941_length_199_cov_190.992063_g79684_i0 PRJNA994052 80941 199 190.992063 380.07420537 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 315 1.99e-81   NTclustered gi|27461806|gb|AY130826.1| 56466 g79684 i0 97.312 3.18090452261307 186 3 93 1 11 196 391 208 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 633 315 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
2251474 2251474 PRJNA994052_P_NODE_23162_length_300_cov_27.704846_g21933_i0 PRJNA994052 23162 300 27.704846 83.114538 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 143 1.61e-29   NTclustered gi|110589646|gb|DQ683345.1| 56466 g21933 i0 77.273 1.13666666666667 264 47 88 3 1 264 125 375 Peranema trichophorum Hsp90 gene, partial cds blastn 341 143 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
6079694 6079694 PRJNA994052_P_NODE_47225_length_245_cov_472.348837_g45974_i0 PRJNA994052 47225 245 472.348837 1157.25465065 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 272 1.56e-68   NTclustered gi|1803019098|gb|MT007870.1| 56466 g45974 i0 89.427 7.31020408163265 227 9 93 9 3 229 1046 1257 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 1791 272 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
7354413 7354413 PRJNA994052_P_NODE_65766_length_218_cov_10.158621_g64510_i0 PRJNA994052 65766 218 10.158621 22.14579378 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 87.9 5.28e-13   NTclustered gi|1624759989|ref|XM_029030923.1| 67003 g64510 i0 83 0.458715596330275 100 13 45 4 118 215 473 376 Trypanosoma theileri putative vacuolar ATP synthase 16 kDa proteolipid subunit (TM35_000591190), partial mRNA blastn 100 87.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
12455439 12455439 PRJNA994052_P_NODE_26110_length_292_cov_10.894977_g24872_i0 PRJNA994052 26110 292 10.894977 31.81333284 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 494 3.74e-135   NTclustered gi|1031970217|gb|CP015651.1| 5693 g24872 i0 98.917 2.8458904109589 277 2 95 1 2 278 1637489 1637764 Trypanosoma cruzi strain Sylvio X10/cl1 chromosome TcI1, partial sequence blastn 831 494 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
12456071 12456071 PRJNA994052_P_NODE_8530_length_355_cov_41.932624_g7348_i0 PRJNA994052 8530 355 41.932624 148.8608152 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 196 1.47e-45   NTclustered gi|686648116|ref|XM_009318228.1| 71804 g7348 i0 85.714 11.4591549295775 196 16 55 1 3 198 94 277 Trypanosoma grayi kinetoplastid membrane protein KMP-11 partial mRNA blastn 4068 196 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
18828129 18828129 PRJNA994052_P_NODE_32735_length_274_cov_385.467662_g31491_i0 PRJNA994052 32735 274 385.467662 1056.18139388 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 324 4.83e-84   NTclustered gi|27461806|gb|AY130826.1| 56466 g31491 i0 88.172 1.01824817518248 279 24 100 7 1 274 772 498 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 279 324 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
23928986 23928986 PRJNA994052_P_NODE_4239_length_426_cov_314.626062_g3416_i0 PRJNA994052 4239 426 314.626062 1340.30702412 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 505 2.62e-138   NTclustered gi|27461806|gb|AY130826.1| 56466 g3416 i0 88.345 1.00704225352113 429 38 99 10 3 426 919 498 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 429 505 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;