RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA994052" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 5 ✖

bioproject 1

  • PRJNA994052 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2548947 2548947 PRJNA994052_P_NODE_75682_length_205_cov_143.871212_g74426_i0 PRJNA994052 75682 205 143.871212 294.9359846 Planktothrix 54304 Bacteria Bacteria 359 9.42e-95   NTclustered gi|2261196917|emb|LR882969.1| 1160 g74426 i0 99 163.960975609756 200 2 99 0 3 202 623222 623421 Planktothrix agardhii strain PCC 7811 genome assembly, chromosome: I blastn 33612 359 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix agardhii
3825004 3825004 PRJNA994052_P_NODE_18283_length_311_cov_45.726891_g17061_i0 PRJNA994052 18283 311 45.726891 142.21063101 root 1 Root_unresolved Root_unresolved 278 4.4e-70   NTclustered gi|63022551|gb|DQ004310.1| 1211 g17061 i0 100 169.565916398714 150 0 58 0 1 150 210 61 Uncultured cyanobacterium clone PEN12 16S ribosomal RNA gene, partial sequence blastn 52735 278 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
10201931 10201931 PRJNA994052_P_NODE_79168_length_201_cov_138.335938_g77911_i0 PRJNA994052 79168 201 138.335938 278.05523538 Cyanophyceae 3028117 Bacteria Bacteria 305 1.22e-78   NTclustered gi|225696212|gb|FJ805879.1| 259957 g77911 i0 94.444 179.059701492537 198 11 99 0 4 201 1827 1630 Uncultured Chroococcidiopsis sp. clone A3_3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 35991 305 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
15301104 15301104 PRJNA994052_P_NODE_68172_length_215_cov_5.429577_g66916_i0 PRJNA994052 68172 215 5.429577 11.67359055 Planktothrix 54304 Bacteria Bacteria 398 2.1099999999999997e-106   NTclustered gi|2261196917|emb|LR882969.1| 1160 g66916 i0 100 12.8697674418605 215 0 100 0 1 215 643611 643397 Planktothrix agardhii strain PCC 7811 genome assembly, chromosome: I blastn 2767 398 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix agardhii
22653942 22653942 PRJNA994052_P_NODE_79178_length_201_cov_131.078125_g77921_i0 PRJNA994052 79178 201 131.078125 263.46703125 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 300 5.65e-77   NTclustered gi|225696212|gb|FJ805879.1| 259957 g77921 i0 93.939 165.094527363184 198 12 99 0 4 201 1827 1630 Uncultured Chroococcidiopsis sp. clone A3_3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 33184 300 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;