RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA993416" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA993416 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
975790 975790 PRJNA993416_P_NODE_13481_length_248_cov_0.880000_g13376_i0 PRJNA993416 13481 248 0.88 2.1824 Akkermansia muciniphila 239935 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1805906055|gb|CP027004.1| 239935 g13376 i0 100 96.9798387096774 248 0 100 0 1 248 2514706 2514953 Akkermansia muciniphila strain EB-AMDK-28 chromosome, complete genome blastn 24051 459 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
12454926 12454926 PRJNA993416_P_NODE_11450_length_260_cov_1.647059_g11345_i0 PRJNA993416 11450 260 1.647059 4.2823534 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 204 6.179999999999999e-48   NTclustered gi|226525317|gb|FJ872374.1| 156588 g11345 i0 81.061 1.99615384615385 264 43 100 7 1 260 29209 28949 Uncultured Verrucomicrobia bacterium clone 184 genomic sequence blastn 519 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
20102326 20102326 PRJNA993416_P_NODE_14996_length_244_cov_0.900585_g14891_i0 PRJNA993416 14996 244 0.900585 2.1974274 Akkermansia muciniphila 239935 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1888387165|gb|CP058562.1| 239935 g14891 i0 100 100 244 0 100 0 1 244 2167892 2168135 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 24400 451 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;