RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA993416" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA993416 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2251011 2251011 PRJNA993416_P_NODE_12602_length_251_cov_0.865169_g12497_i0 PRJNA993416 12602 251 0.865169 2.17157419 Pendulispora rubella 2741070 Bacteria Bacteria 254 5.81e-63   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g12497 i0 87.615 4.72111553784861 218 27 87 0 3 220 10146014 10145797 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 1185 254 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
15003727 15003727 PRJNA993416_P_NODE_11012_length_264_cov_3.083770_g10907_i0 PRJNA993416 11012 264 3.08377 8.1411528 Labilithrix luteola 1391654 Bacteria Bacteria 287 6.07e-73   NTclustered gi|913610804|gb|CP012333.1| 1391654 g10907 i0 86.466 53.1363636363636 266 30 99 4 2 264 1074453 1074191 Labilithrix luteola strain DSM 27648, complete genome blastn 14028 287 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
20102259 20102259 PRJNA993416_P_NODE_11636_length_258_cov_1.891892_g11531_i0 PRJNA993416 11636 258 1.891892 4.88108136 Nannocystis punicea 2995304 Bacteria Bacteria 283 7.649999999999999e-72   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g11531 i0 86.538 3.00387596899225 260 31 100 3 1 258 9995065 9994808 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 775 283 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;