RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA993416" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA993416 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4803690 4803690 PRJNA993416_P_NODE_12544_length_251_cov_0.865169_g12439_i0 PRJNA993416 12544 251 0.865169 2.17157419 Caldilineaceae bacterium 2614250 Bacteria Bacteria 95.3 3.73e-15   NTclustered gi|2893356069|emb|OZ220492.1| 2614250 g12439 i0 93.75 0.868525896414343 64 3 25 1 116 179 551698 551760 MAG: Caldilineaceae bacterium isolate e886e3b1-96bd-41d4-96ed-8e2f365de7fb genome assembly, chromosome: 1 blastn 218 95.3 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
8628966 8628966 PRJNA993416_P_NODE_5067_length_371_cov_1.439597_g4962_i0 PRJNA993416 5067 371 1.439597 5.34090487 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 76.8 2.09e-9   NTclustered gi|2891481993|emb|OZ219765.1| 2026734 g4962 i0 100 0.407008086253369 41 0 11 0 331 371 3636755 3636795 MAG: Dehalococcoidia bacterium isolate 2efd49d1-a845-418d-b650-c606456da4a2 genome assembly, chromosome: 2 blastn 151 76.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;