RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA993416" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA993416 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9904016 9904016 PRJNA993416_P_NODE_14628_length_245_cov_0.895349_g14523_i0 PRJNA993416 14628 245 0.895349 2.19360505 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 320 5.49e-83   NTclustered gi|922689899|gb|CP012410.1| 712357 g14523 i0 90.204 1 245 24 100 0 1 245 275498 275742 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 245 320 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
12752160 12752160 PRJNA993416_P_NODE_15050_length_244_cov_0.900585_g14945_i0 PRJNA993416 15050 244 0.900585 2.1974274 Fusobacterium 848 Bacteria Bacteria 451 1.86e-122   NTclustered gi|958159838|gb|CP013334.1| 1307444 g14945 i0 100 99.9959016393443 244 0 100 0 1 244 680199 679956 Fusobacterium hwasookii ChDC F300, complete genome blastn 24399 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
12752167 12752167 PRJNA993416_P_NODE_16270_length_241_cov_0.916667_g16165_i0 PRJNA993416 16270 241 0.916667 2.20916747 Fusobacterium 848 Bacteria Bacteria 167 7.429999999999999e-37   NTclustered gi|1370537877|gb|CP028108.1| 860 g16165 i0 82.412 4.10373443983402 199 27 81 8 47 241 42030 41836 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 989 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
16278697 16278697 PRJNA993416_P_NODE_16293_length_241_cov_0.916667_g16188_i0 PRJNA993416 16293 241 0.916667 2.20916747 Leptotrichia mesophila 3239303 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|2785242249|gb|CP165646.1| 3239303 g16188 i0 100 2.00414937759336 241 0 100 0 1 241 1034121 1033881 Leptotrichia sp. HSP-342 chromosome, complete genome blastn 483 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia mesophila
25202161 25202161 PRJNA993416_P_NODE_8880_length_284_cov_1.232227_g8775_i0 PRJNA993416 8880 284 1.232227 3.49952468 Cetobacterium somerae 188913 Bacteria Bacteria 503 6.02e-138   NTclustered gi|2201062197|gb|CP092519.1| 188913 g8775 i0 98.592 451.102112676056 284 4 100 0 1 284 49196 48913 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 128113 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;