RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA993416" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA993416 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
975936 975936 PRJNA993416_P_NODE_5101_length_370_cov_1.215488_g4996_i0 PRJNA993416 5101 370 1.215488 4.4973056 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 529 1.3299999999999996e-145   NTclustered gi|209883090|ref|XM_002142934.1| 441375 g4996 i0 92.432 2.52432432432432 370 28 100 0 1 370 476 107 Cryptosporidium muris RN66 uncharacterized protein (CMU_002460), partial mRNA blastn 934 529 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
11179380 11179380 PRJNA993416_P_NODE_9269_length_280_cov_1.990338_g9164_i0 PRJNA993416 9269 280 1.990338 5.5729464 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 318 2.3e-82   NTclustered gi|209883090|ref|XM_002142934.1| 441375 g9164 i0 88.104 1.57142857142857 269 30 96 2 13 280 808 541 Cryptosporidium muris RN66 uncharacterized protein (CMU_002460), partial mRNA blastn 440 318 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
16278658 16278658 PRJNA993416_P_NODE_14453_length_245_cov_2.220930_g14348_i0 PRJNA993416 14453 245 2.22093 5.4412785 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 436 5.229999999999999e-118   NTclustered gi|33520233|gb|AY273978.1| 143451 g14348 i0 98.776 100.024489795918 245 3 100 0 1 245 498 254 Plasmopara viticola large subunit ribosomal RNA gene, partial sequence blastn 24506 436 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
17850561 17850561 PRJNA993416_P_NODE_13154_length_249_cov_0.875000_g13049_i0 PRJNA993416 13154 249 0.875 2.17875 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1270520056|ref|XM_022955900.1| 5861 g13049 i0 100 0.345381526104418 29 0 12 0 148 176 158 130 Plasmodium yoelii cysteine-rich PDZ-binding protein, putative (PY17X_0905100), partial mRNA blastn 86 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;