RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA986547" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA986547 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6376328 6376328 PRJNA986547_P_NODE_12225_length_240_cov_6.802395_g12143_i0 PRJNA986547 12225 240 6.802395 16.325748 Vannellidae 95227 Discosea other_Eukaryota 350 6.839999999999999e-92   NTclustered gi|62865946|gb|AY929921.1| 325071 g12143 i0 93.004 101.433333333333 243 12 100 3 1 240 104 344 Platyamoeba sp. strain SUM1S/I 18S small subunit ribosomal RNA gene, partial sequence blastn 24344 353 0.991501416430595 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain SUM1S/I
7351923 7351923 PRJNA986547_P_NODE_16186_length_207_cov_6.507463_g16104_i0 PRJNA986547 16186 207 6.507463 13.47044841 Cochliopodium minus 313997 Discosea other_Eukaryota 250 5.98e-62   NTclustered gi|330902891|gb|JF298270.1| 313997 g16104 i0 88.835 93.2028985507246 206 19 99 4 2 205 1060 857 Cochliopodium minus clone 5201 actin gene, partial cds blastn 19293 250 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
8627125 8627125 PRJNA986547_P_NODE_13347_length_233_cov_2.218750_g13265_i0 PRJNA986547 13347 233 2.21875 5.1696875 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 167 7.14e-37   NTclustered gi|470519083|ref|XM_004353374.1| 1257118 g13265 i0 88.406 2.8068669527897 138 16 59 0 2 139 1003 1140 Acanthamoeba castellanii str. Neff actinrelated protein 2, putative (ACA1_074650), partial mRNA blastn 654 167 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22651184 22651184 PRJNA986547_P_NODE_1358_length_390_cov_1.451104_g1276_i0 PRJNA986547 1358 390 1.451104 5.6593056 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 307 7.2e-79   NTclustered gi|470418521|ref|XM_004337050.1| 1257118 g1276 i0 82.086 73.7820512820513 374 54 95 7 9 380 10 372 Acanthamoeba castellanii str. Neff cyclophylin, putative (ACA1_215460), partial mRNA blastn 28775 307 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25200308 25200308 PRJNA986547_P_NODE_13500_length_231_cov_10.696203_g13418_i0 PRJNA986547 13500 231 10.696203 24.70822893 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 219 1.9199999999999993e-52   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g13418 i0 84.071 87.5324675324675 226 36 98 0 4 229 336 111 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 20220 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;