RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA986547" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA986547 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6376325 6376325 PRJNA986547_P_NODE_11685_length_242_cov_1.272189_g11603_i0 PRJNA986547 11685 242 1.272189 3.07869738 Campylobacter 194 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|1935888393|gb|CP049239.1| 199 g11603 i0 99.174 236.144628099174 242 2 100 0 1 242 1033016 1032775 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 57147 436 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
11177508 11177508 PRJNA986547_P_NODE_15309_length_215_cov_8.330986_g15227_i0 PRJNA986547 15309 215 8.330986 17.9116199 uncultured Aliarcobacter sp. 2321118 Bacteria Bacteria 176 1.08e-39   NTclustered gi|2621785459|emb|OY781917.1| 2321118 g15227 i0 81.735 2.02325581395349 219 32 100 6 1 215 249279 249493 MAG: uncultured Aliarcobacter sp. isolate 35e71162-57ce-4606-8f28-3f72018c63bd genome assembly, chromosome: 2 blastn 435 176 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter uncultured Aliarcobacter sp.
21376252 21376252 PRJNA986547_P_NODE_13297_length_233_cov_3.187500_g13215_i0 PRJNA986547 13297 233 3.1875 7.426875 Campylobacter gracilis 824 Bacteria Bacteria 387 5.03e-103   NTclustered gi|909717139|gb|CP012196.1| 824 g13215 i0 100 227.381974248927 209 0 100 0 25 233 501641 501433 Campylobacter gracilis strain ATCC 33236, complete genome blastn 52980 387 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;