RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA986547" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA986547 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13727714 13727714 PRJNA986547_P_NODE_14071_length_228_cov_2.264516_g13989_i0 PRJNA986547 14071 228 2.264516 5.16309648 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 359 1.07e-94   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g13989 i0 95.946 41.6052631578947 222 8 97 1 6 226 1878009 1877788 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 9486 359 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
16574761 16574761 PRJNA986547_P_NODE_10093_length_246_cov_7.323699_g10011_i0 PRJNA986547 10093 246 7.323699 18.01629954 Fimbriimonas 1005038 Bacteria Bacteria 322 1.53e-83   NTclustered gi|663071213|gb|CP007139.1| 661478 g10011 i0 90.283 162.024390243902 247 22 100 2 1 246 27658 27413 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 39858 322 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
16574829 16574829 PRJNA986547_P_NODE_3673_length_295_cov_6.220721_g3591_i0 PRJNA986547 3673 295 6.220721 18.35112695 Fimbriimonas 1005038 Bacteria Bacteria 344 4.03e-90   NTclustered gi|663071213|gb|CP007139.1| 661478 g3591 i0 87.667 980.725423728814 300 32 100 3 1 295 26828 27127 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 289314 344 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
24223940 24223940 PRJNA986547_P_NODE_3999_length_290_cov_7.967742_g3917_i0 PRJNA986547 3999 290 7.967742 23.1064518 Bacteria 2 Bacteria Bacteria 499 7.98e-137   NTclustered gi|95115294|gb|DQ501336.1| 157466 g3917 i0 97.917 97.9137931034483 288 6 99 0 1 288 1044 1331 Uncultured candidate division OP10 bacterium clone ST11-34 16S ribosomal RNA gene, partial sequence blastn 28395 499 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;