RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA986547" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA986547 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12453351 12453351 PRJNA986547_P_NODE_14790_length_221_cov_6.067568_g14708_i0 PRJNA986547 14790 221 6.067568 13.40932528 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 374 3.68e-99   NTclustered gi|922689899|gb|CP012410.1| 712357 g14708 i0 97.273 344.31221719457 220 6 99 0 1 220 52811 53030 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 76093 374 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
15002153 15002153 PRJNA986547_P_NODE_5052_length_278_cov_6.239024_g4970_i0 PRJNA986547 5052 278 6.239024 17.34448672 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 440 4.6699999999999976e-119   NTclustered gi|922689899|gb|CP012410.1| 712357 g4970 i0 95.307 116.172661870504 277 13 99 0 2 278 51598 51874 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 32296 440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
19123632 19123632 PRJNA986547_P_NODE_635_length_563_cov_5.316327_g554_i0 PRJNA986547 635 563 5.316327 29.93092101 Leptotrichia 32067 Bacteria Bacteria 867 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g554 i0 94.523 434.893428063943 566 23 100 8 1 563 1757083 1757643 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 244845 869 0.997698504027618 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
22651322 22651322 PRJNA986547_P_NODE_6298_length_267_cov_1.015464_g6216_i0 PRJNA986547 6298 267 1.015464 2.71128888 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 198 2.9699999999999993e-46   NTclustered gi|922689899|gb|CP012410.1| 712357 g6216 i0 80.882 1.0187265917603 272 34 99 15 1 265 1816179 1816439 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 272 198 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;