RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA986547" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA986547 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2547952 2547952 PRJNA986547_P_NODE_16042_length_208_cov_57.496296_g15960_i0 PRJNA986547 16042 208 57.496296 119.59229568 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 379 7.359999999999998e-101   NTclustered gi|291495599|gb|GU823226.1| 152704 g15960 i0 99.519 100 208 1 100 0 1 208 899 692 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 20800 379 1 Eukaryota Sar             uncultured stramenopile
6077496 6077496 PRJNA986547_P_NODE_8085_length_253_cov_6.050000_g8003_i0 PRJNA986547 8085 253 6.05 15.3065 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 451 1.94e-122   NTclustered gi|759083562|gb|KM222179.1| 1607889 g8003 i0 99.2 90.7430830039526 250 2 99 0 1 250 183 432 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 22958 451 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
9902248 9902248 PRJNA986547_P_NODE_10888_length_244_cov_1.783626_g10806_i0 PRJNA986547 10888 244 1.783626 4.35204744 Rimostrombidium veniliae 702563 SAR_Eukaryotes SAR_Eukaryotes 313 9.139999999999999e-81   NTclustered gi|759083337|gb|KM221993.1| 702563 g10806 i0 90.041 99.2868852459016 241 24 99 0 1 241 321 561 Rimostrombidium veniliae voucher LWW2007042901 alpha-tubulin gene, partial cds blastn 24226 313 1 Eukaryota Sar   Ciliophora Spirotrichea Choreotrichida Strobilidiidae Rimostrombidium Rimostrombidium veniliae
16574770 16574770 PRJNA986547_P_NODE_11993_length_241_cov_1.750000_g11911_i0 PRJNA986547 11993 241 1.75 4.2175 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 440 3.959999999999999e-119   NTclustered gi|323690576|gb|GU935635.1| 88167 g11911 i0 99.585 99.8755186721992 241 1 100 0 1 241 1131 891 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 24070 440 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
18826039 18826039 PRJNA986547_P_NODE_8295_length_252_cov_2.262570_g8213_i0 PRJNA986547 8295 252 2.26257 5.7016764 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 392 1.1899999999999997e-104   NTclustered gi|820695469|tpe|LN714488.1| 572307 g8213 i0 94.841 14.1349206349206 252 12 100 1 1 252 157190 156940 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 3562 392 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
23926596 23926596 PRJNA986547_P_NODE_10259_length_246_cov_1.260116_g10177_i0 PRJNA986547 10259 246 1.260116 3.09988536 Leptoamphisiella vermis 692523 SAR_Eukaryotes SAR_Eukaryotes 303 5.56e-78   NTclustered gi|399146156|gb|JQ736707.1| 692523 g10177 i0 88.98 102.056910569106 245 27 99 0 2 246 493 249 Leptoamphisiella vermis isolate 061224 alpha-tubulin gene, partial cds; macronuclear blastn 25106 303 1 Eukaryota Sar   Ciliophora Spirotrichea Pseudoamphisiellida   Leptoamphisiella Leptoamphisiella vermis
25200377 25200377 PRJNA986547_P_NODE_17380_length_197_cov_6.362903_g17298_i0 PRJNA986547 17380 197 6.362903 12.53491891 Sticholonche zanclea 1054997 SAR_Eukaryotes SAR_Eukaryotes 180 7.499999999999998e-41   NTclustered gi|1133508237|emb|LT673688.1| 1054997 g17298 i0 83.77 56.5532994923858 191 29 96 2 7 196 249 438 Sticholonche zanclea partial mRNA for Ribosomal Protein S6 (rps6 gene), isolate AKK-51 2016 blastn 11141 180 1 Eukaryota Sar       Sticholonchida Sticholonchidae Sticholonche Sticholonche zanclea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;