RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 5 ✖

bioproject 1

  • PRJNA986481 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2249179 2249179 PRJNA986481_P_NODE_59562_length_242_cov_1.046632_g59037_i0 PRJNA986481 59562 242 1.046632 2.53284944 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 392 1.1299999999999999e-104   NTclustered gi|985614202|gb|CP010834.1| 1609968 g59037 i0 95.868 10.9876033057851 242 10 100 0 1 242 219271 219030 Methanobrevibacter sp. YE315, complete genome blastn 2659 392 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
11176593 11176593 PRJNA986481_P_NODE_14029_length_438_cov_1.120823_g13505_i0 PRJNA986481 14029 438 1.120823 4.90920474 Methanolobus sp. ZRKC2 3125783 Archaea Archaea 54.7 0.012   NTclustered gi|2708450131|gb|CP146980.1| 3125783 g13505 i0 92.308 0.089041095890411 39 1 9 2 282 319 2375858 2375821 Methanolobus sp. ZRKC2 chromosome, complete genome blastn 39 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp. ZRKC2
15300002 15300002 PRJNA986481_P_NODE_38132_length_266_cov_0.930876_g37607_i0 PRJNA986481 38132 266 0.930876 2.47613016 Halalkalicoccus 332246 Archaea Archaea 446 9.549999999999999e-121   NTclustered gi|1779814881|ref|NR_164956.1| 2675002 g37607 i0 96.992 101.661654135338 266 7 99 1 2 266 281 16 Halalkalicoccus subterraneus strain GSM28 16S ribosomal RNA, partial sequence blastn 27042 446 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus subterraneus
16276456 16276456 PRJNA986481_P_NODE_35553_length_274_cov_1.142222_g35028_i0 PRJNA986481 35553 274 1.142222 3.12968828 Acidianus sulfidivorans 312539 Archaea Archaea 56.5 0.002   NTclustered gi|1820310478|gb|CP029288.2| 619593 g35028 i0 96.97 0.12043795620438 33 1 12 0 59 91 707439 707471 Acidianus sulfidivorans JP7 chromosome, complete genome blastn 33 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus sulfidivorans
17551457 17551457 PRJNA986481_P_NODE_35734_length_273_cov_1.718750_g35209_i0 PRJNA986481 35734 273 1.71875 4.6921875 Nitrosopumilus cobalaminigenes 1470066 Archaea Archaea 52.8 0.025   NTclustered gi|1869221159|gb|CP026993.1| 1470066 g35209 i0 100 0.102564102564103 28 0 10 0 153 180 768244 768271 Nitrosopumilus cobalaminigenes strain HCA1 chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus cobalaminigenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;