RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA986481 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13727410 13727410 PRJNA986481_P_NODE_50931_length_251_cov_1.000000_g50406_i0 PRJNA986481 50931 251 1 2.51 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 329 9.38e-86   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g50406 i0 90.476 108.788844621514 252 21 100 3 1 251 76409 76160 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 27306 329 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
16574698 16574698 PRJNA986481_P_NODE_51033_length_251_cov_1.000000_g50508_i0 PRJNA986481 51033 251 1 2.51 Bacteria 2 Bacteria Bacteria 182 2.78e-41   NTclustered gi|316941978|gb|CP002431.1| 643562 g50508 i0 80.816 65.7609561752988 245 35 95 7 11 249 2475509 2475747 Pseudodesulfovibrio aespoeensis Aspo-2 chromosome, complete genome blastn 16506 183 0.994535519125683 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis
21376102 21376102 PRJNA986481_P_NODE_60057_length_241_cov_1.052083_g59532_i0 PRJNA986481 60057 241 1.052083 2.53552003 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 296 9.08e-76   NTclustered gi|2891482145|emb|OZ219878.1| 2202153 g59532 i0 88.843 109.269709543568 242 26 100 1 1 241 215623 215864 MAG: Thermodesulfobacteriota bacterium isolate 5b8d878f-b741-4c1d-a9b4-bc29eff46044 genome assembly, chromosome: 1 blastn 26334 296 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;