RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA986481 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2248755 2248755 PRJNA986481_P_NODE_33362_length_283_cov_1.457265_g32837_i0 PRJNA986481 33362 283 1.457265 4.12405995 Treponema putidum 221027 Bacteria Bacteria 78.7 4.31e-10   NTclustered gi|2277017610|gb|CP038804.1| 221027 g32837 i0 92.727 12.4028268551237 55 3 19 1 148 201 805661 805607 Treponema putidum strain OMZ 835 chromosome, complete genome blastn 3510 78.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema putidum
22651077 22651077 PRJNA986481_P_NODE_63258_length_206_cov_2.165605_g62733_i0 PRJNA986481 63258 206 2.165605 4.4611463 Treponema saccharophilum 165 Bacteria Bacteria 93.5 1.06e-14   NTclustered gi|2581918939|dbj|AP025288.1| 165 g62733 i0 89.189 7.68446601941748 74 8 56 0 125 198 373822 373749 Treponema saccharophilum JCM 32279 DNA, complete genome blastn 1583 93.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema saccharophilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;