RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA986481 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2248597 2248597 PRJNA986481_P_NODE_24722_length_330_cov_1.982206_g24197_i0 PRJNA986481 24722 330 1.982206 6.5412798 Adineta vaga 104782 Rotifera other_Eukaryota 582 8.91e-162   NTclustered gi|259129963|gb|GQ398061.1| 104782 g24197 i0 98.485 4.36969696969697 330 5 100 0 1 330 10066 10395 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1442 582 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
2248917 2248917 PRJNA986481_P_NODE_43782_length_259_cov_1.023810_g43257_i0 PRJNA986481 43782 259 1.02381 2.6516679 Adineta vaga complex sp. C JFF-2016 1813166 Rotifera other_Eukaryota 324 4.53e-84   NTclustered gi|1005061344|gb|KU861166.1| 1813166 g43257 i0 89.189 97.8687258687259 259 28 100 0 1 259 227 485 Adineta vaga complex sp. C JFF-2016 isolate H4-28a 82 kDa heat shock protein gene, partial cds blastn 25348 324 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. C JFF-2016
3523805 3523805 PRJNA986481_P_NODE_1303_length_1173_cov_15.096085_g1075_i0 PRJNA986481 1303 1173 15.096085 177.07707705 Brachionus rubens 392764 Rotifera other_Eukaryota 647 1.2e-180   NTclustered gi|632795126|gb|KJ489417.1| 392764 g1075 i0 80.207 36.3162830349531 869 166 74 5 288 1153 866 1 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 42599 647 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
7351823 7351823 PRJNA986481_P_NODE_9506_length_530_cov_1.937630_g8987_i0 PRJNA986481 9506 530 1.93763 10.269439 Habrotrocha constricta 104786 Rotifera other_Eukaryota 560 6.99e-155   NTclustered gi|402761725|gb|JX183994.1| 104786 g8987 i0 89.616 4.41132075471698 443 42 83 4 68 508 630 190 Habrotrocha constricta ATP synthase F0 subunit 6 (ATP6) gene, partial cds; mitochondrial blastn 2338 560 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
8924947 8924947 PRJNA986481_P_NODE_20487_length_362_cov_1.814696_g19962_i0 PRJNA986481 20487 362 1.814696 6.56919952 Adineta 104781 Rotifera other_Eukaryota 641 1.5999999999999993e-179   NTclustered gi|1005055512|gb|KU860655.1| 1813164 g19962 i0 98.619 53.4917127071823 362 5 100 0 1 362 1660 2021 Adineta vaga complex sp. A JFF-2016 isolate H001 28S ribosomal RNA gene, partial sequence blastn 19364 641 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. A JFF-2016
9902192 9902192 PRJNA986481_P_NODE_708_length_1453_cov_4.797009_g567_i0 PRJNA986481 708 1453 4.797009 69.70054077 Asplanchna sp. 3231738 Rotifera other_Eukaryota 1131 0   NTclustered gi|2778092484|gb|PP988072.1| 3231738 g567 i0 80.883 51.0743289745354 1449 265 99 10 1 1440 116 1561 Asplanchna sp. chromosome II mitochondrion, complete sequence blastn 74211 1131 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
13727646 13727646 PRJNA986481_P_NODE_871_length_1371_cov_8.809380_g702_i0 PRJNA986481 871 1371 8.80938 120.7765998 Brachionus rubens 392764 Rotifera other_Eukaryota 638 8.479999999999999e-178   NTclustered gi|632795131|gb|KJ489418.1| 392764 g702 i0 75.704 14.8205689277899 1350 287 97 35 14 1340 5739 7070 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 20319 638 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17849852 17849852 PRJNA986481_P_NODE_634_length_1501_cov_5.906336_g499_i0 PRJNA986481 634 1501 5.906336 88.65410336 Philodinida 104783 Rotifera other_Eukaryota 1768 0   NTclustered gi|402761741|gb|JX184002.1| 104786 g499 i0 87.933 48.5369753497668 1500 181 99 0 2 1501 19 1518 Habrotrocha constricta cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 72854 1779 0.993816750983699 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
18825669 18825669 PRJNA986481_P_NODE_56975_length_244_cov_2.789744_g56450_i0 PRJNA986481 56975 244 2.789744 6.80697536 Adineta vaga 104782 Rotifera other_Eukaryota 230 9.47e-56   NTclustered gi|187233665|gb|EU643499.1| 104782 g56450 i0 83.607 1 244 40 100 0 1 244 412 169 Adineta vaga ribosomal protein L26 mRNA, partial cds blastn 244 230 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
20100024 20100024 PRJNA986481_P_NODE_33616_length_282_cov_1.300429_g33091_i0 PRJNA986481 33616 282 1.300429 3.66720978 Philodina roseola 96448 Rotifera other_Eukaryota 207 5.25e-49   NTclustered gi|209867641|gb|EU637019.1| 96448 g33091 i0 82.353 34.4468085106383 238 42 84 0 1 238 26275 26038 Philodina roseola tyramine beta hydroxylase-like protein, metallophosphoesterase domain containing 1-like protein, transmembrane protein 45b-like protein, solute carrier family 7-like protein, G protein-coupled receptor-like protein, serpin 6 precursor, molybdenum cofactor-like protein, hypothetical protein, ankyrin repeat containing protein, neuronal calcium sensor family member 2-like protein, HSP70-like protein, hypothetical protein, Hox-5b, Smc-like protein, and golgi autoantigen golgin subfamily a4-like protein genes, complete cds blastn 9714 207 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
20398586 20398586 PRJNA986481_P_NODE_8976_length_543_cov_20.769231_g8463_i0 PRJNA986481 8976 543 20.769231 112.77692433 Philodinidae 44580 Rotifera other_Eukaryota 544 7.219999999999998e-150   NTclustered gi|270267490|ref|NC_013568.1| 231624 g8463 i0 86.187 31.4935543278085 514 58 93 11 35 541 1896 2403 Rotaria rotatoria mitochondrion, complete genome blastn 17101 549 0.990892531876138 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
22651060 22651060 PRJNA986481_P_NODE_6158_length_646_cov_5.710218_g569_i1 PRJNA986481 6158 646 5.710218 36.88800828 Adineta vaga complex sp. C JFF-2016 1813166 Rotifera other_Eukaryota 538 4.0399999999999984e-148   NTclustered gi|1005061344|gb|KU861166.1| 1813166 g569 i1 88.864 72.9489164086687 440 46 68 3 162 598 1399 960 Adineta vaga complex sp. C JFF-2016 isolate H4-28a 82 kDa heat shock protein gene, partial cds blastn 47125 538 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. C JFF-2016
25199381 25199381 PRJNA986481_P_NODE_11560_length_482_cov_1.866051_g11037_i0 PRJNA986481 11560 482 1.866051 8.99436582 Habrotrocha constricta 104786 Rotifera other_Eukaryota 523 8.279999999999997e-144   NTclustered gi|402761805|gb|JX184034.1| 104786 g11037 i0 86.555 18.5290456431535 476 62 99 2 1 475 805 331 Habrotrocha constricta NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 8931 523 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
25200161 25200161 PRJNA986481_P_NODE_6060_length_650_cov_5.594010_g5592_i0 PRJNA986481 6060 650 5.59401 36.361065 Habrotrocha constricta 104786 Rotifera other_Eukaryota 630 6.529999999999999e-176   NTclustered gi|402761773|gb|JX184018.1| 104786 g5592 i0 84.341 4.91538461538462 645 99 99 2 5 648 28 671 Habrotrocha constricta cytochrome c oxidase subunit 3 (COX3) gene, complete cds; mitochondrial blastn 3195 630 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;