RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA986481 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
973360 973360 PRJNA986481_P_NODE_22921_length_342_cov_17.071672_g22396_i0 PRJNA986481 22921 342 17.071672 58.38511824 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.032   NTclustered gi|690640268|emb|LN186750.1| 99802 g22396 i0 100 0.0818713450292398 28 0 8 0 33 60 418 391 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0024628 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
8626164 8626164 PRJNA986481_P_NODE_11487_length_483_cov_3.976959_g10964_i0 PRJNA986481 11487 483 3.976959 19.20871197 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 58.4 0.001   NTclustered gi|1084298719|ref|XM_018797412.1| 6183 g10964 i0 97.143 0.072463768115942 35 0 7 1 218 251 347 313 Schistosoma mansoni hypothetical protein partial mRNA blastn 35 58.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
15001120 15001120 PRJNA986481_P_NODE_12172_length_469_cov_3.533333_g11648_i0 PRJNA986481 12172 469 3.533333 16.57133177 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 719 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g11648 i0 96.552 0.987206823027719 435 14 93 1 35 469 12 445 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 463 719 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16276562 16276562 PRJNA986481_P_NODE_4333_length_748_cov_3.035765_g3925_i0 PRJNA986481 4333 748 3.035765 22.7075222 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.021   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g3925 i0 100 0.0387700534759358 29 0 4 0 165 193 5389 5361 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;