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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA986481 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2248497 2248497 PRJNA986481_P_NODE_18562_length_380_cov_1.824773_g18037_i0 PRJNA986481 18562 380 1.824773 6.9341374 Strongyloides ratti 34506 Nematoda Nematoda 211 5.65e-50   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g18037 i0 81.111 4.03684210526316 270 46 70 5 108 374 1212 945 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 1534 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
2547724 2547724 PRJNA986481_P_NODE_23222_length_340_cov_2.701031_g22697_i0 PRJNA986481 23222 340 2.701031 9.1835054 Rhabditida 6236 Nematoda Nematoda 87.9 8.8e-13   NTclustered gi|150984667|gb|EF634995.1| 358043 g22697 i0 86.25 4.29117647058824 80 11 24 0 261 340 194 115 Pristionchus sp. 6 RS5101 small subunit ribosomal protein 28 (rps-28) mRNA, complete cds blastn 1459 87.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
3524352 3524352 PRJNA986481_P_NODE_49743_length_252_cov_2.536946_g49218_i0 PRJNA986481 49743 252 2.536946 6.39310392 Strongyloides papillosus 174720 Nematoda Nematoda 198 2.77e-46   NTclustered gi|687022641|emb|LM525555.1| 174720 g49218 i0 81.481 5.75 243 43 96 2 10 251 397712 397953 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 1449 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
4801787 4801787 PRJNA986481_P_NODE_56164_length_245_cov_1.545918_g55639_i0 PRJNA986481 56164 245 1.545918 3.7874991 Strongyloides ratti 34506 Nematoda Nematoda 60.2 1.32e-4   NTclustered gi|1376152563|ref|XM_024644830.1| 34506 g55639 i0 94.872 3.26122448979592 39 1 16 1 6 44 3926 3963 Strongyloides ratti Hypothetical protein (SRAE_X000048000), partial mRNA blastn 799 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
7351065 7351065 PRJNA986481_P_NODE_17126_length_396_cov_1.743516_g16601_i0 PRJNA986481 17126 396 1.743516 6.90432336 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 220 9.82e-53   NTclustered gi|567773431|gb|KF739066.1| 6326 g16601 i0 82.422 9.88131313131313 256 41 64 4 57 310 13 266 Bursaphelenchus xylophilus isolate ZJZS FTT-2 protein mRNA, complete cds blastn 3913 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
9902155 9902155 PRJNA986481_P_NODE_61248_length_236_cov_2.294118_g60723_i0 PRJNA986481 61248 236 2.294118 5.41411848 Diplogastrellus gracilis 669117 Nematoda Nematoda 174 4.33e-39   NTclustered gi|256709130|gb|GQ422217.1| 669117 g60723 i0 83.598 79.9703389830509 189 27 79 4 50 236 723 537 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 18873 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
9902187 9902187 PRJNA986481_P_NODE_6948_length_614_cov_2.693805_g6461_i0 PRJNA986481 6948 614 2.693805 16.5399627 Brugia malayi 6279 Nematoda Nematoda 67.6 2.17e-6   NTclustered gi|2082286190|ref|XM_043080968.1| 6279 g6461 i0 95.238 7.41205211726384 42 2 7 0 3 44 1777 1736 Brugia malayi Iroquois-class homeobox protein C36F7.1, putative (Bma-irx-1), partial mRNA blastn 4551 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
9902223 9902223 PRJNA986481_P_NODE_9068_length_541_cov_2.705285_g8554_i0 PRJNA986481 9068 541 2.705285 14.63559185 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.82e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g8554 i0 81.166 24.6543438077634 223 28 40 11 76 291 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
18824987 18824987 PRJNA986481_P_NODE_14315_length_433_cov_4.736979_g13790_i0 PRJNA986481 14315 433 4.736979 20.51111907 Pristionchus pauli 376545 Nematoda Nematoda 292 2.26e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g13790 i0 81.492 5.2101616628175504 362 61 83 6 32 390 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
18825686 18825686 PRJNA986481_P_NODE_5815_length_663_cov_7.563518_g5359_i0 PRJNA986481 5815 663 7.563518 50.14612434 Necator americanus 51031 Nematoda Nematoda 87.9 1.81e-12   NTclustered gi|2707603115|ref|XM_064206786.1| 51031 g5359 i0 91.045 0.40422322775264 67 3 13 1 467 533 192 129 Necator americanus uncharacterized protein (RB195_015869), partial mRNA blastn 268 87.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
23926154 23926154 PRJNA986481_P_NODE_38219_length_266_cov_0.930876_g37694_i0 PRJNA986481 38219 266 0.930876 2.47613016 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.024   NTclustered gi|687022786|emb|LM525898.1| 174720 g37694 i0 100 0.105263157894737 28 0 11 0 105 132 11034 11007 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000272 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25199897 25199897 PRJNA986481_P_NODE_43360_length_260_cov_0.957346_g42835_i0 PRJNA986481 43360 260 0.957346 2.4890996 Caenorhabditis elegans 6239 Nematoda Nematoda 481 2.55e-131   NTclustered gi|1972265861|ref|NM_001392207.1| 6239 g42835 i0 100 3 260 0 100 0 1 260 858 1117 Caenorhabditis elegans TASPase homolog (tasp-1), mRNA blastn 780 481 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;