RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA986481 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
974045 974045 PRJNA986481_P_NODE_841_length_1384_cov_4.538577_g678_i0 PRJNA986481 841 1384 4.538577 62.81390568 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 2359 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g678 i0 97.946 118.014450867052 1363 25 98 2 22 1384 1249613 1250972 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 163332 2359 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
2547762 2547762 PRJNA986481_P_NODE_33342_length_283_cov_1.632479_g32817_i0 PRJNA986481 33342 283 1.632479 4.61991557 Candidatus Protochlamydia 282132 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|262292945|gb|FJ976101.1| 389348 g32817 i0 100 110.689045936396 283 0 100 0 1 283 300 18 Protochlamydia naegleriophila strain cvE27 16S ribosomal RNA gene, partial sequence blastn 31325 523 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
16276441 16276441 PRJNA986481_P_NODE_34653_length_277_cov_36.872807_g34128_i0 PRJNA986481 34653 277 36.872807 102.13767539 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 399 7.899999999999999e-107   NTclustered gi|971146634|emb|LN879502.1| 389348 g34128 i0 98.667 97.3862815884477 225 3 81 0 53 277 1249073 1249297 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 26976 399 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
20100463 20100463 PRJNA986481_P_NODE_62156_length_229_cov_4.166667_g61631_i0 PRJNA986481 62156 229 4.166667 9.54166743 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 379 8.249999999999999e-101   NTclustered gi|971146634|emb|LN879502.1| 389348 g61631 i0 96.507 1 229 8 100 0 1 229 2288496 2288268 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 229 379 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;