RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA986481" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA986481 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2249179 2249179 PRJNA986481_P_NODE_59562_length_242_cov_1.046632_g59037_i0 PRJNA986481 59562 242 1.046632 2.53284944 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 392 1.1299999999999999e-104   NTclustered gi|985614202|gb|CP010834.1| 1609968 g59037 i0 95.868 10.9876033057851 242 10 100 0 1 242 219271 219030 Methanobrevibacter sp. YE315, complete genome blastn 2659 392 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
11176593 11176593 PRJNA986481_P_NODE_14029_length_438_cov_1.120823_g13505_i0 PRJNA986481 14029 438 1.120823 4.90920474 Methanolobus sp. ZRKC2 3125783 Archaea Archaea 54.7 0.012   NTclustered gi|2708450131|gb|CP146980.1| 3125783 g13505 i0 92.308 0.089041095890411 39 1 9 2 282 319 2375858 2375821 Methanolobus sp. ZRKC2 chromosome, complete genome blastn 39 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp. ZRKC2
15300002 15300002 PRJNA986481_P_NODE_38132_length_266_cov_0.930876_g37607_i0 PRJNA986481 38132 266 0.930876 2.47613016 Halalkalicoccus 332246 Archaea Archaea 446 9.549999999999999e-121   NTclustered gi|1779814881|ref|NR_164956.1| 2675002 g37607 i0 96.992 101.661654135338 266 7 99 1 2 266 281 16 Halalkalicoccus subterraneus strain GSM28 16S ribosomal RNA, partial sequence blastn 27042 446 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus subterraneus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;