RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA983848" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA983848 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2547207 2547207 PRJNA983848_P_NODE_33082_length_729_cov_4.420732_g27394_i0 PRJNA983848 33082 729 4.420732 32.22713628 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 122 5.48e-23   NTclustered gi|325187249|emb|FR824179.1| 890382 g27394 i0 91.111 13.1604938271605 90 8 12 0 1 90 9336 9247 Albugo laibachii Nc14, genomic contig CONTIG_134_NC14_v4_68328_217 blastn 9594 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12445620 12445620 PRJNA983848_P_NODE_109510_length_287_cov_3.336449_g103627_i0 PRJNA983848 109510 287 3.336449 9.57560863 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 121 7.169999999999999e-23   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g103627 i0 88.889 26.5435540069686 99 9 34 2 190 287 41764 41667 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 7618 121 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
17849162 17849162 PRJNA983848_P_NODE_156914_length_243_cov_1.835294_g151031_i0 PRJNA983848 156914 243 1.835294 4.45976442 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 172 1.6099999999999996e-38   NTclustered gi|50261276|ref|NC_005984.1| 4770 g151031 i0 81.081 100.604938271605 222 36 90 6 17 234 10573 10354 Saprolegnia ferax mitochondrion, complete genome blastn 24447 172 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;