RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA983848" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA983848 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
966977 966977 PRJNA983848_P_NODE_125781_length_266_cov_2.088083_g119898_i0 PRJNA983848 125781 266 2.088083 5.55430078 Cetobacterium somerae 188913 Bacteria Bacteria 462 9.48e-126   NTclustered gi|2865366169|gb|CP122292.1| 188913 g119898 i0 98.12 362.244360902256 266 4 100 1 1 266 420434 420170 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 96357 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
6070430 6070430 PRJNA983848_P_NODE_129585_length_262_cov_1.428571_g123702_i0 PRJNA983848 129585 262 1.428571 3.74285602 Leptotrichia wadei 157687 Bacteria Bacteria 484 1.99e-132   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g123702 i0 100 165.603053435115 262 0 100 0 1 262 2299137 2298876 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 43388 484 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
7344624 7344624 PRJNA983848_P_NODE_120486_length_273_cov_1.410000_g114603_i0 PRJNA983848 120486 273 1.41 3.8493 Fusobacterium polymorphum 76857 Bacteria Bacteria 505 1.6e-138   NTclustered gi|1208657894|gb|CP021934.1| 76857 g114603 i0 100 476.736263736264 273 0 100 0 1 273 1602526 1602798 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 130149 505 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
7345599 7345599 PRJNA983848_P_NODE_148906_length_247_cov_1.649425_g143023_i0 PRJNA983848 148906 247 1.649425 4.07407975 Leptotrichia wadei 157687 Bacteria Bacteria 440 4.079999999999999e-119   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g143023 i0 98.785 412.963562753036 247 3 100 0 1 247 220538 220784 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 102002 440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
17545112 17545112 PRJNA983848_P_NODE_131374_length_260_cov_1.363636_g125491_i0 PRJNA983848 131374 260 1.363636 3.5454536 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 475 1.1899999999999999e-129   NTclustered gi|2028889048|gb|CP072378.1| 712362 g125491 i0 99.615 1 260 1 100 0 1 260 168661 168920 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 260 475 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221
25498073 25498073 PRJNA983848_P_NODE_90640_length_321_cov_1.254032_g84757_i0 PRJNA983848 90640 321 1.254032 4.02544272 Fusobacterium 848 Bacteria Bacteria 52.8 0.03   NTclustered gi|2705042081|gb|CP085192.1| 856 g84757 i0 100 0.348909657320872 28 0 9 0 227 254 2865428 2865401 Fusobacterium varium strain SB069 chromosome blastn 112 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;