RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA983848" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA983848 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6069580 6069580 PRJNA983848_P_NODE_105705_length_293_cov_2.018182_g99822_i0 PRJNA983848 105705 293 2.018182 5.91327326 Coccomyxa subellipsoidea 248742 Plants Plants 58.4 5.84e-4   NTclustered gi|545359120|ref|XM_005644997.1| 574566 g99822 i0 97.059 0.453924914675768 34 1 12 0 167 200 1386 1353 Coccomyxa subellipsoidea C-169 carbonic anhydrase partial mRNA blastn 133 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
7649482 7649482 PRJNA983848_P_NODE_102426_length_298_cov_14.088889_g96543_i0 PRJNA983848 102426 298 14.088889 41.98488922 Eukaryota 2759 Plants Plants 544 3.7499999999999997e-150   NTclustered gi|1898545223|gb|MT951391.1| 3078 g96543 i0 99.663 99.6543624161074 297 1 99 0 1 297 587 883 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 29697 549 0.990892531876138 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
10200213 10200213 PRJNA983848_P_NODE_61128_length_416_cov_1.755102_g55246_i0 PRJNA983848 61128 416 1.755102 7.30122432 Trebouxiophyceae 75966 Plants Plants 63.9 1.85e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g55246 i0 95 15.6947115384615 40 2 10 0 363 402 37 76 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6529 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
12446501 12446501 PRJNA983848_P_NODE_133870_length_257_cov_1.532609_g127987_i0 PRJNA983848 133870 257 1.532609 3.93880513 Chlamydomonas reinhardtii 3055 Plants Plants 263 9.92e-66   NTclustered gi|2082243702|ref|XM_043061450.1| 3055 g127987 i0 86.809 47.3540856031128 235 31 91 0 23 257 976 742 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g204250v5), mRNA blastn 12170 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12750775 12750775 PRJNA983848_P_NODE_164270_length_231_cov_4.259494_g158387_i0 PRJNA983848 164270 231 4.259494 9.83943114 Prototheca 3110 Plants Plants 412 8.22e-111   NTclustered gi|1158987632|gb|KX353637.1| 3112 g158387 i0 100 51.4372294372294 223 0 97 0 1 223 356 578 Prototheca zopfii strain HSH93851 28S ribosomal RNA gene, partial sequence blastn 11882 412 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca zopfii
19122814 19122814 PRJNA983848_P_NODE_105515_length_293_cov_3.363636_g99632_i0 PRJNA983848 105515 293 3.363636 9.85545348 Trebouxiophyceae 75966 Plants Plants 161 4.33e-35   NTclustered gi|1169296931|gb|KY364701.1| 63676 g99632 i0 88.148 9.82252559726962 135 16 46 0 156 290 5552 5418 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 2878 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;