RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA983838" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA983838 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
965556 965556 PRJNA983838_P_NODE_71561_length_325_cov_7.325397_g69194_i0 PRJNA983838 71561 325 7.325397 23.80754025 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 276 1.6599999999999999e-69   NTclustered gi|2289|emb|X59936.1| 4766 g69194 i0 87.448 71.3661538461538 239 30 74 0 1 239 239 1 A.bisexualis gene for actin blastn 23194 276 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
18816867 18816867 PRJNA983838_P_NODE_36375_length_563_cov_22.173469_g34025_i0 PRJNA983838 36375 563 22.173469 124.83663047 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 3.07e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g34025 i0 79.05 14.0763765541741 358 71 63 4 105 460 127 482 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
21367334 21367334 PRJNA983838_P_NODE_42877_length_490_cov_25.158273_g40512_i0 PRJNA983838 42877 490 25.158273 123.2755377 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.6e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g40512 i0 80.533 69.0367346938775 375 65 75 4 100 467 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;