RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJNA983838" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 28 ✖

tax_clade 1

bioproject 1

  • PRJNA983838 · 28 ✖

analysis 1

  • blastn · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
964632 964632 PRJNA983838_P_NODE_109281_length_249_cov_0.886364_g106914_i0 PRJNA983838 109281 249 0.886364 2.20704636 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 411 3.2299999999999996e-110   NTclustered gi|829162594|ref|XM_001013247.3| 312017 g106914 i0 96.386 21.5542168674699 249 9 100 0 1 249 142 390 Tetrahymena thermophila SB210 60S ribosomal protein L23 partial mRNA blastn 5367 411 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
1271460 1271460 PRJNA983838_P_NODE_38761_length_533_cov_3.489130_g36401_i0 PRJNA983838 38761 533 3.48913 18.5970629 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 979 0   NTclustered gi|2651357791|gb|PP174306.1| 41631 g36401 i0 99.812 95.9887429643527 533 1 100 0 1 533 1767 2299 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 51162 979 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
1271473 1271473 PRJNA983838_P_NODE_52701_length_412_cov_3.616519_g50334_i0 PRJNA983838 52701 412 3.616519 14.90005828 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 189 2.8899999999999992e-43   NTclustered gi|315570308|tpg|BK007916.1| 5911 g50334 i0 78.873 1.37864077669903 284 56 68 4 91 372 52 333 TPA_exp: Tetrahymena thermophila 40S ribosomal protein rpS9e mRNA, complete cds blastn 568 189 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
2241232 2241232 PRJNA983838_P_NODE_91002_length_276_cov_1.458128_g88635_i0 PRJNA983838 91002 276 1.458128 4.02443328 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 355 1.73e-93   NTclustered gi|229595107|ref|XM_001020023.3| 312017 g88635 i0 89.855 1 276 28 100 0 1 276 450 175 Tetrahymena thermophila SB210 60S ribosomal protein L21 partial mRNA blastn 276 355 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3515721 3515721 PRJNA983838_P_NODE_37743_length_546_cov_3.408034_g35387_i0 PRJNA983838 37743 546 3.408034 18.60786564 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 948 0   NTclustered gi|10782|emb|X54004.1| 5908 g35387 i0 97.985 58.4432234432234 546 11 100 0 1 546 1611 2156 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 31910 948 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
3516397 3516397 PRJNA983838_P_NODE_81523_length_296_cov_1.892377_g79156_i0 PRJNA983838 81523 296 1.892377 5.60143592 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 313 1.14e-80   NTclustered gi|829144883|ref|XM_001009836.3| 312017 g79156 i0 88.933 0.85472972972973 253 28 85 0 1 253 253 1 Tetrahymena thermophila SB210 40S ribosomal protein S12 partial mRNA blastn 253 313 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3516606 3516606 PRJNA983838_P_NODE_92483_length_273_cov_1.560000_g90116_i0 PRJNA983838 92483 273 1.56 4.2588 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 466 7.55e-127   NTclustered gi|10935|emb|X56693.1| 5908 g90116 i0 97.436 91.1611721611722 273 7 100 0 1 273 665 393 Tetrahymena pyriformis TUF11 gene for ubiquitin-ribosomal protein fusion protein blastn 24887 466 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
3823370 3823370 PRJNA983838_P_NODE_38603_length_535_cov_3.668831_g36244_i0 PRJNA983838 38603 535 3.668831 19.62824585 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 966 0   NTclustered gi|10662|emb|X56170.1| 5894 g36244 i0 99.252 99.3140186915888 535 4 100 0 1 535 35 569 T.canadensis gene for small subunit ribosomal RNA (16S like rRNA) blastn 53133 966 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena canadensis
4792816 4792816 PRJNA983838_P_NODE_114304_length_245_cov_1.523256_g111937_i0 PRJNA983838 114304 245 1.523256 3.7319772 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 331 2.5400000000000002e-86   NTclustered gi|229594318|ref|XM_001030083.3| 312017 g111937 i0 94.419 0.877551020408163 215 12 88 0 28 242 1 215 Tetrahymena thermophila SB210 40S ribosomal protein S3 partial mRNA blastn 215 331 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
5099727 5099727 PRJNA983838_P_NODE_69644_length_332_cov_1.996139_g67277_i0 PRJNA983838 69644 332 1.996139 6.62718148 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 457 5.669999999999999e-124   NTclustered gi|10793|emb|X12769.1| 5908 g67277 i0 91.566 96.9186746987952 332 26 99 2 2 332 534 864 Tetrahymena pyriformis beta-tubulin gene 2 (beta-TT2) blastn 32177 457 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
6068955 6068955 PRJNA983838_P_NODE_73405_length_319_cov_2.971545_g71038_i0 PRJNA983838 73405 319 2.971545 9.47922855 Stylonychia mytilus 5950 SAR_Eukaryotes SAR_Eukaryotes 237 7.69e-58   NTclustered gi|8050573|gb|AF213664.1|AF213664 5950 g71038 i0 80.374 2.01253918495298 321 55 99 6 1 317 1117 1433 Stylonychia mytilus elongation factor 2 (EF2) gene, partial cds blastn 642 237 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia mytilus
9892957 9892957 PRJNA983838_P_NODE_117208_length_243_cov_0.917647_g114841_i0 PRJNA983838 117208 243 0.917647 2.22988221 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 239 1.57e-58   NTclustered gi|829197694|ref|XM_001029851.3| 312017 g114841 i0 84.362 1.71604938271605 243 38 100 0 1 243 165 407 Tetrahymena thermophila SB210 papain family cysteine protease partial mRNA blastn 417 239 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
9893030 9893030 PRJNA983838_P_NODE_121388_length_233_cov_4.462500_g119021_i0 PRJNA983838 121388 233 4.4625 10.397625 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 322 1.44e-83   NTclustered gi|829123749|ref|XM_001008606.3| 312017 g119021 i0 91.845 1 233 16 100 1 1 233 423 194 Tetrahymena thermophila SB210 60S ribosomal protein L38 partial mRNA blastn 233 322 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
10200057 10200057 PRJNA983838_P_NODE_34728_length_587_cov_6.385214_g32381_i0 PRJNA983838 34728 587 6.385214 37.48120618 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 979 0   NTclustered gi|2082575652|gb|MZ825337.1| 2821798 g32381 i0 96.769 71.3339011925043 588 17 100 2 1 587 484 1070 Tetrahymena foissneri isolate ST 1 AV internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 41873 985 0.993908629441624 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena foissneri
11168999 11168999 PRJNA983838_P_NODE_67569_length_340_cov_0.876404_g65202_i0 PRJNA983838 67569 340 0.876404 2.9797736 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 300 1.04e-76   NTclustered gi|829160170|ref|XM_001012263.3| 312017 g65202 i0 85.866 30.8735294117647 283 38 83 2 23 304 883 1164 Tetrahymena thermophila SB210 heat shock 70 kDa protein partial mRNA blastn 10497 300 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12750592 12750592 PRJNA983838_P_NODE_111810_length_247_cov_1.344828_g109443_i0 PRJNA983838 111810 247 1.344828 3.32172516 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 307 4.32e-79   NTclustered gi|161736|gb|L01416.1|TETBTUBUB 5911 g109443 i0 89.069 94.2591093117409 247 27 100 0 1 247 766 1012 Tetrahymena thermophila beta-tubulin (BTU2) gene, complete cds blastn 23282 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12750611 12750611 PRJNA983838_P_NODE_123730_length_219_cov_5.328767_g121362_i0 PRJNA983838 123730 219 5.328767 11.66999973 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 399 6.009999999999999e-107   NTclustered gi|10853|emb|X56168.1| 5912 g121362 i0 99.543 99.9908675799087 219 1 100 0 1 219 794 576 T.tropicalis gene for small subunit ribosomal RNA (16S like rRNA) blastn 21898 399 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena tropicalis
14992716 14992716 PRJNA983838_P_NODE_115572_length_244_cov_1.643275_g113205_i0 PRJNA983838 115572 244 1.643275 4.009591 Pleurotricha lanceolata 57511 SAR_Eukaryotes SAR_Eukaryotes 230 9.47e-56   NTclustered gi|21779953|gb|AF506074.1| 57511 g113205 i0 85.52 137.459016393443 221 30 90 2 1 220 1490 1271 Pleurotricha lanceolata macronuclear histone H4 gene, complete cds blastn 33540 230 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Pleurotricha Pleurotricha lanceolata
16267836 16267836 PRJNA983838_P_NODE_124513_length_201_cov_4.937500_g122145_i0 PRJNA983838 124513 201 4.9375 9.924375 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 344 2.5799999999999998e-90   NTclustered gi|2651357791|gb|PP174306.1| 41631 g122145 i0 97.512 61.3333333333333 201 5 100 0 1 201 3600 3400 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12328 344 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
17543986 17543986 PRJNA983838_P_NODE_99374_length_261_cov_1.244681_g97007_i0 PRJNA983838 99374 261 1.244681 3.24861741 Colpoda inflata 5980 SAR_Eukaryotes SAR_Eukaryotes 403 5.6999999999999985e-108   NTclustered gi|4063575|gb|AF056098.1|AF056098 5980 g97007 i0 94.615 96.1877394636015 260 14 99 0 2 261 365 106 Colpoda inflata translation elongation factor 1-alpha (TEF1) gene, partial cds blastn 25105 403 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
17849039 17849039 PRJNA983838_P_NODE_69574_length_332_cov_2.490347_g67207_i0 PRJNA983838 69574 332 2.490347 8.26795204 root 1 Root_unresolved Root_unresolved 614 3.1799999999999995e-171   NTclustered gi|1621572405|gb|MH051920.1| 5893 g67207 i0 100 100.006024096386 332 0 100 0 1 332 977 646 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 33202 614 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
20397762 20397762 PRJNA983838_P_NODE_116196_length_244_cov_0.912281_g113829_i0 PRJNA983838 116196 244 0.912281 2.22596564 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 315 2.5399999999999992e-81   NTclustered gi|161841|gb|M76718.1|TETRPL29A 5911 g113829 i0 90.456 2.84016393442623 241 19 98 4 1 239 169 407 T.thermophila rpL29 mRNA, complete cds blastn 693 315 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
20397833 20397833 PRJNA983838_P_NODE_78756_length_303_cov_2.952174_g76389_i0 PRJNA983838 78756 303 2.952174 8.94508722 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 555 1.7599999999999995e-153   NTclustered gi|10370|emb|X56167.1| 5892 g76389 i0 99.67 99.7656765676568 303 1 100 0 1 303 1290 1592 T.australis gene for small subunit ribosomal RNA (16S like rRNA) blastn 30229 555 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena australis
22642920 22642920 PRJNA983838_P_NODE_82658_length_293_cov_1.868182_g80291_i0 PRJNA983838 82658 293 1.868182 5.47377326 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 431 2.99e-116   NTclustered gi|10792|emb|X12768.1| 5908 g80291 i0 93.174 99.2423208191126 293 20 100 0 1 293 1117 1409 Tetrahymena pyriformis beta-tubulin gene 1 (beta-TT1) blastn 29078 431 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
23917541 23917541 PRJNA983838_P_NODE_124219_length_207_cov_4.843284_g121851_i0 PRJNA983838 124219 207 4.843284 10.02559788 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 305 1.26e-78   NTclustered gi|146186088|ref|XM_001032999.2| 312017 g121851 i0 93.627 0.985507246376812 204 13 99 0 4 207 367 164 Tetrahymena thermophila SB210 40S ribosomal protein S7 partial mRNA blastn 204 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
23918245 23918245 PRJNA983838_P_NODE_71559_length_325_cov_8.519841_g69192_i0 PRJNA983838 71559 325 8.519841 27.68948325 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 588 1.88e-163   NTclustered gi|10782|emb|X54004.1| 5908 g69192 i0 99.385 61.1507692307692 325 1 100 1 1 325 2949 3272 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 19874 588 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
25192150 25192150 PRJNA983838_P_NODE_88940_length_280_cov_1.381643_g86573_i0 PRJNA983838 88940 280 1.381643 3.8686004 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 383 8.06e-102   NTclustered gi|829194480|ref|XM_012800280.1| 312017 g86573 i0 91.727 1.28571428571429 278 19 98 2 7 280 454 177 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 360 383 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
25497856 25497856 PRJNA983838_P_NODE_56720_length_388_cov_4.187302_g54353_i0 PRJNA983838 56720 388 4.187302 16.24673176 root 1 Root_unresolved Root_unresolved 689 0   NTclustered gi|345541658|gb|JN547815.1| 5911 g54353 i0 98.961 67.5412371134021 385 4 99 0 4 388 3801 3417 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 26206 689 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;