RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA983838" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA983838 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
964622 964622 PRJNA983838_P_NODE_108781_length_249_cov_2.494318_g106414_i0 PRJNA983838 108781 249 2.494318 6.21085182 Acidobacteriota bacterium 1978231 Bacteria Bacteria 279 9.5e-71   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g106414 i0 90.521 161.044176706827 211 20 85 0 1 211 4652053 4652263 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 40100 279 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
4792830 4792830 PRJNA983838_P_NODE_114764_length_245_cov_0.906977_g112397_i0 PRJNA983838 114764 245 0.906977 2.22209365 Paludibaculum fermentans 1473598 Bacteria Bacteria 235 2.05e-57   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g112397 i0 90.96 281.477551020408 177 12 72 3 35 210 4785881 4785708 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 68962 235 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
7342547 7342547 PRJNA983838_P_NODE_114786_length_245_cov_0.906977_g112419_i0 PRJNA983838 114786 245 0.906977 2.22209365 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 270 5.609999999999999e-68   NTclustered gi|2874253692|emb|OY969418.1| 171953 g112419 i0 86.939 113.930612244898 245 27 99 5 1 242 4231852 4231610 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 27913 270 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;